Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1210 ATGTCTATTCATCCAGATCACCCAACTAAACAAGGTTCATCAGACATCAATACTTATGATGACGAGAGGAAGAAAAAGCTTGGGTCCTTTAGGAAGGCAGCAATGAATGCCTCCAACAAGTTCAGAACTTCCATGAAAAAGAGGAGTCGAAGAAGCAGCAGTAGGGTGATGTCTGTCACTATTGAAGATGACATTGATGCAGACGAGTTGCAGGCAGTGGAGGGATTCCGTCAAGCACTTATCCAGGAAGAGCTACTGCCTTCAAAACATGACGATCATCATATGATGCTAAGATTTTTGAAGGCCAGGAAGTTTGAGATTGAAAAAACAAAGCAAATGTGGAGTGACATGCTCCAATGGAGAAAGAATTTCGGGGCAGACACTATTATGGAGGATTTCGAATTCAGGGAATTAGATGAAGTCTTAAAGTACTATCCACAAGGACATCATGGGGTCGACAAGGATGGTCGACCGGTTTACATTGAAAGGCTGGGTATGGTGGATTACGGAAAACTGATGCAAGTCACAACAATGGATCGCTATGTGAAATACCATGTCAGGGAGTTTGAGAGGACCTTTGTTGTAAAACTCCCTGCCTGTTCACTTGCAGCAAGGAGGCATATTGACCAGAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTTAAGAGCCTGAACAAAGCTGCAAGGGATCTCCTCTCGCAGATTCAGAAGATTGACGGTGATAATTATCCTGAGTCACTGAACCGCATGTTCATCATTAATGCTGGTTCCGGATTCAGACTTTTGTGGAACAGTGTCAAATCATTCCTTGATCCCAAAACGACAGCAAAAATCAATGTTCTGGGTAACAAATACCAGAGCAAATTGCTTGAGATAATTGATGCTAGTCAGCTGCCAGATTTCCTCGGTGGCAGCTGTACATGTGCTGATAAAGGTGGCTGCATGCGATCAGACAAGGGACCATGGAATGATCCTGACATACTGAAGATGGTTCAAAACGGTGAGGCAAAATGTGCCCGGATAATTTTTTCAGACATGGCAGCTGAAGCAGCTGATATCTCTCCAAGGGATCAGTGGGAGCATTCTGAGCATCAGAAACTCGCCCCTGTTCCTGACGAAGCTGCCATCGTAAAGAAGAGCGATACTACCTATAACTATGAAAAGTTCGATCCGATGGTACAGCACAAGGGTGTGGATTCAAGTTGGGAAAAATCATTACAAAAGAACAAATCAGTCCTATCTAAAGAAATGATATCAACTTATCGTGCGGTCAAGGTTCCTGATGGGGCAGGTAATCATCTAGTAGGTGGGATAATGGCCTTTGTGGTCGGAATAATGACCATGGTCCGCCTCACCAAAAACATGCCAACAAAACTTGCTGCTGCTGCTTCAGTTAGCGGTGGTTTGAATCAGGAAGGCTACAAAATAGTTAAAGGCCATAAGTCATCTCCGGCTTCAGCACCGCCCATATCTACAGCTGATATCATGACTATGATCAAACGCATGGTGGAGCTGGAACAGAGGATGAATATTCTCTCCCAAACTCCGGCAGCTATGCCTCAGGAGAAAGAGATGTTGTTGAATGCTACTCTAACCAGAGTGGATGCCCTGGAACGAGCATTATCAGAAACCCAGAAGGCATTGGAGGACTCTCTTGCTCGGCAGGAGGAGGTCCTGGCGTATATAGAGAGGAAGAAGAATAAGAAAAAGAACAATAAAATGAATCCATTCAATTGGTGA 1743 44.46 MSIHPDHPTKQGSSDINTYDDERKKKLGSFRKAAMNASNKFRTSMKKRSRRSSSRVMSVTIEDDIDADELQAVEGFRQALIQEELLPSKHDDHHMMLRFLKARKFEIEKTKQMWSDMLQWRKNFGADTIMEDFEFRELDEVLKYYPQGHHGVDKDGRPVYIERLGMVDYGKLMQVTTMDRYVKYHVREFERTFVVKLPACSLAARRHIDQSTTILDVQGVGLKSLNKAARDLLSQIQKIDGDNYPESLNRMFIINAGSGFRLLWNSVKSFLDPKTTAKINVLGNKYQSKLLEIIDASQLPDFLGGSCTCADKGGCMRSDKGPWNDPDILKMVQNGEAKCARIIFSDMAAEAADISPRDQWEHSEHQKLAPVPDEAAIVKKSDTTYNYEKFDPMVQHKGVDSSWEKSLQKNKSVLSKEMISTYRAVKVPDGAGNHLVGGIMAFVVGIMTMVRLTKNMPTKLAAAASVSGGLNQEGYKIVKGHKSSPASAPPISTADIMTMIKRMVELEQRMNILSQTPAAMPQEKEMLLNATLTRVDALERALSETQKALEDSLARQEEVLAYIERKKNKKKNNKMNPFNW 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10270462 10274233 + Conep08aG0124700.1 Cone8ag1210 443759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1210 580 SMART CRAL_TRIO_N_2 92 117 IPR011074 -
Cone8ag1210 580 CDD SEC14 138 305 IPR001251 -
Cone8ag1210 580 Gene3D - 125 337 IPR036865 -
Cone8ag1210 580 Pfam CRAL/TRIO domain 143 305 IPR001251 -
Cone8ag1210 580 Coils Coil 528 573 - -
Cone8ag1210 580 SUPERFAMILY CRAL/TRIO N-terminal domain 63 133 IPR036273 -
Cone8ag1210 580 FunFam SEC14 cytosolic factor 125 337 - -
Cone8ag1210 580 MobiDBLite consensus disorder prediction 1 15 - -
Cone8ag1210 580 MobiDBLite consensus disorder prediction 1 22 - -
Cone8ag1210 580 Gene3D - 31 124 - -
Cone8ag1210 580 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 567 IPR051026 -
Cone8ag1210 580 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 137 311 IPR001251 -
Cone8ag1210 580 SUPERFAMILY CRAL/TRIO domain 137 333 IPR036865 -
Cone8ag1210 580 SMART sec14_4 137 308 IPR001251 -
Cone8ag1210 580 Pfam CRAL/TRIO, N-terminal domain 88 115 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1210 K26544 - - csv:101214906 689.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1253 Cone-Chr6:9985217 Cone8ag1210 Cone-Chr8:10270462 3.02E-155 dispersed
Cone8ag1210 Cone-Chr8:10270462 Cone9ag0679 Cone-Chr9:3237934 1.76E-98 dispersed
Cone8ag1210 Cone-Chr8:10270462 Cone8ag1211 Cone-Chr8:10274433 2.80E-191 tandem
Cone10ag0980 Cone-Chr10:6604550 Cone8ag1210 Cone-Chr8:10270462 2.73E-227 wgd
Cone12ag1161 Cone-Chr12:9242558 Cone8ag1210 Cone-Chr8:10270462 0 wgd
Cone20ag0126 Cone-Chr20:561561 Cone8ag1210 Cone-Chr8:10270462 3.47E-128 wgd
Cone3ag1174 Cone-Chr3:30397100 Cone8ag1210 Cone-Chr8:10270462 3.17E-201 wgd
Cone4ag1930 Cone-Chr4:13658176 Cone8ag1210 Cone-Chr8:10270462 9.90E-168 wgd
Cone7ag1842 Cone-Chr7:11961413 Cone8ag1210 Cone-Chr8:10270462 3.71E-106 wgd
Cone8ag1210 Cone-Chr8:10270462 Cone9ag1571 Cone-Chr9:11324351 3.35E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40