Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1212 ATGGACCTTTCTGATGATGTTGTTTCTCAGCCTGCCCCTGCTAGGCGCAAATTTCAACCTAAGGCCAAACCACGTCCTAGAAGAGAAGCTTCTGTGTCAGTTCCTTCAACGTTGCCCAGCAATGGAAAGGAAAAGGCTACTGTATCATCTTCCACAGTATTGGATGATAAACAGTCTGCTGAACCTGTAGATGTCATAGAAAATTCGTTGACGAACACATTAGAGATTGTTTCTGACAACAAGCAATCTCAGAATAATGGAACTACGGAAGAGGCCAATACATTCTTGGGTGCTGAACACTCTGTTGACATTAGAGAGTACAGAGTGCCTGACCCAGTTGGTCTATCTTCAGCTACCTCCACCTATATAGAGAACAAGGAACCATTGACAGAAGATATCTGTTCAAGTGTTAAGTTCTCAGATGATGGAAAAATCTTGGGAGCATTAAATCCTTCTCAAACAGTTACCCCTGATGCTCAGGATGTTGGGGTTCTGGGTTTTAGTGGAAATGGATCAGTCTCTAATGAAAGTGGGGATTGGCATTCTACCTCAGGAAAATCAGTGGTGGAGAATGCGGACATTTTTTCAGGGCTGGAATATCTAGATGATTTGCTTAATCAACCTACAAGCGGTGGTGCATCTGAAGATCAAGTAAGATGCAATGAAGTTGCAGGTTCCTATGTTGGGGGCATTCAGATTGATAACACAAGGTTCGATACAGAGGAAGCTGATGAAGATCCTGTCTTTGATACTTCTAACTTTGAGTCCACCATTGCATTGGGAAGACGAGCTGAAAAGTTTATACCCAAGCCCAGGTTAAAAACTGGAATGGAGAAAACTAACACCAGCAGCACTCACCCAGAAATCTCTATTGCACCTCCAACAGACTTAGAGCTTTCCTTCCAAGCAGATGACATACTTAGTTACTCATCACTTGGGTTAGATGATTCAATTCCTGTCGACTCAAACACCGAAGTACGCATTAATGAAGAACCAACAAATCAAGCAGAAACAGATTGCCCTCAAAGTTCTTTTGCCCAGGATGACATCCATTCAGAGGTTCTGCCACCATTGCCAGGGGAGAGTGGTAAGAGTGGCAGAGAAAAAGCTTCAGGGAGCGAACATGGCAAATCAACGAGGCTGCGAAGGCGAGTGTCTCGTCAACTTGTTGATGAGCCAGAAGATGAAACTAATGTAGAACAGGGTCCCCCTGATCAGCCAACCTATAACTCTTACATGGATGATGAAGAATATAATGATAATGAAGGTGAGGGAGGAAGAATGCCTGAGAAGAGAAAACGTTCCAGAAAGTCTGGGAAACGTGCAACTGAAAACGAAAAACCTAGTCAGAAACAGAAGGGGTCCAATGACGAAGCAGGCGTCAAATCTTCCGAAAAACGCCCAAAAAAATTCTCTCATTCAACTCGCCGGAACAAAAGACTAGTGGACAAGACTTTACTTGAAACTCCAGAGGATGAAATTGACTTTGAAAAGATACGTTTCAAGGATCTGATTATTTTCCATGAACATAAGGAGCGACTAGCGAATAAAGAGGCTAAATCAAAAGCATCATTGCCCAGTCAAAGAGCTGAAAATGTTGCGCGCGAGGAAGCCTGTCCCAGTGAAGACAGAACCCTTGATTCTGAGCAAGAAGAAGGTTTTGATGATGTTAAAATTGATTCAAGCTCTTTTTTCTTCAATTACCAATCGTTCATGAAAAAAGAGCCCCGTGTAAAATGGTCAAAACAAGACACTGAGCTTTTGATTGAGGGTGTTAAACAATTCGGGACAAATCTATATATGATACAACTGCTTTTTCCCGGCCGATCACATAAACAAATCAAGTCGAAATTTACTAGCAAGAATCCACAACTAAGACTGCAACTTAAAGAAGCTATGGAGAGTCGTAGCAAAGATTATTCGCTTTTAAAATCAGTTGCTGAGCAGCTGCTTCAGGCCAAAAAAGAGAAGGCTGATGAAGAAGGAGGAGGAGGAGGAGAAGAAGAAGACCTGAATGACAATGCTAGTGAGGGTGTAGAGGAGGCAACAAACCGAGAAACAAATGTTGAATTCGAAAAATCCGGCCATGTGGAGGAAGATGGTAATAATGATAAGGAAGAAGCAGATGCTGGTGAATTTCATAGTCCTTCCAAGAATGAAAGTGCCGACGAGCTCGAGATGTGGAATGAGTACAAGTATGATTATTAG 2208 42.44 MDLSDDVVSQPAPARRKFQPKAKPRPRREASVSVPSTLPSNGKEKATVSSSTVLDDKQSAEPVDVIENSLTNTLEIVSDNKQSQNNGTTEEANTFLGAEHSVDIREYRVPDPVGLSSATSTYIENKEPLTEDICSSVKFSDDGKILGALNPSQTVTPDAQDVGVLGFSGNGSVSNESGDWHSTSGKSVVENADIFSGLEYLDDLLNQPTSGGASEDQVRCNEVAGSYVGGIQIDNTRFDTEEADEDPVFDTSNFESTIALGRRAEKFIPKPRLKTGMEKTNTSSTHPEISIAPPTDLELSFQADDILSYSSLGLDDSIPVDSNTEVRINEEPTNQAETDCPQSSFAQDDIHSEVLPPLPGESGKSGREKASGSEHGKSTRLRRRVSRQLVDEPEDETNVEQGPPDQPTYNSYMDDEEYNDNEGEGGRMPEKRKRSRKSGKRATENEKPSQKQKGSNDEAGVKSSEKRPKKFSHSTRRNKRLVDKTLLETPEDEIDFEKIRFKDLIIFHEHKERLANKEAKSKASLPSQRAENVAREEACPSEDRTLDSEQEEGFDDVKIDSSSFFFNYQSFMKKEPRVKWSKQDTELLIEGVKQFGTNLYMIQLLFPGRSHKQIKSKFTSKNPQLRLQLKEAMESRSKDYSLLKSVAEQLLQAKKEKADEEGGGGGEEEDLNDNASEGVEEATNRETNVEFEKSGHVEEDGNNDKEEADAGEFHSPSKNESADELEMWNEYKYDY 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10279714 10284976 - Conep08aG0124900.1 Cone8ag1212 443761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1212 735 MobiDBLite consensus disorder prediction 535 552 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 1 63 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 276 290 - -
Cone8ag1212 735 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 14 707 - GO:0000126(PANTHER)|GO:0001156(PANTHER)|GO:0070898(PANTHER)
Cone8ag1212 735 SUPERFAMILY Homeodomain-like 579 619 IPR009057 -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 352 489 - -
Cone8ag1212 735 Gene3D - 580 658 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 679 735 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 274 296 - -
Cone8ag1212 735 SMART sant 576 624 IPR001005 -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 654 735 - -
Cone8ag1212 735 CDD SANT 579 618 IPR001005 -
Cone8ag1212 735 Pfam Myb DNA-binding like 570 654 IPR039467 -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 439 468 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 33 57 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 367 394 - -
Cone8ag1212 735 MobiDBLite consensus disorder prediction 515 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1212 K15198 - - csv:101216268 367.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1163 Cone-Chr12:9255223 Cone8ag1212 Cone-Chr8:10279714 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1163 Cone8ag1212 . . . . . . Blo04g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004585 1 4 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46710 PF01926 MMR_HSR1 3.20E-15 CL0023 Cone TF