Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1214 ATGCTTAGGGATCGAAAAGAAATGGTGAAAGAGACTGCTTATTACGATGTATTGGGCATTAATCTGGACGCCTCCCCTGCTGACATCAAGAAGGCTTACTATGTCAAGGCAAGGGTAGTTCACCCAGATAAAAATCAAGGAGACCCGAATGCTGCCGAAAAGTTTCAGGTTTTGGGCGAAGCCTATCAAGTACTGAGTGATCCAGAGAAGCGAGAAGCATATGACAAGCATGGGAAGGAAGGAATACAACCGGACTCTATGTTGGACCCATCAGCTGTTTTCGGAATGCTTTTCGGAAGTGACTTATTTGAAGATTACGTGGGCCAGCTTGCTCTGGCTACTTTAGCATCGGTAGAAACTGGAGACGAATCACAAGACCCAGAAGCCCGAAAGCAGAAAATTCAGGAGAAGATAAGGTCAGCTCAAAAGGAAAGGGTAGAAAAACTTGTTGGAATTCTGACAGAGCGACTTCAACGATTTGTGGAGAATCCAAATGGTACTGATTTTGTTGAATGGGCAACTTCTGAGGCACAACACCTTTCAAAAGCTGCTTTTGGCGAGGCCATGTTGCATACCATTGGATATATTTACACAAGGAAAGCTGCTAAAGAAATTGGAAAAGATATAAGGTACATGAAGGTGCCCTTTTTAGCAGAGTGGGTAAGGGATAAAGGTCACTTGATAAAATCACAAGTCATGGCAGCTTCAGGTGCTGTTTCTCTGATTCAAATACAGGAGGATCTGAAGAAGCTAAACCAAGGAGAAAACAGTGAAGAGTCTGTAGAGAAAGCTATAGAAGAGAAGAAAGATGCTATGCTTAATTCACTCTGGCAGATTAATGTGGTCGATATCGAGTCCACCTTGTCACATGTTTGCCGAGCAGTTCTTAGAGAGCCAGGTATGGACAAGGATGTACTCAAATTGCGGGCCAAAGCACTCAAGACATTAGGAACAATTTTCCAGGGTGCAAAGGCACCTTACAGTAGAGCAAATAGCCTTCGGCATGAGGAGGTAGAAGCTCCTCCATTGGCATGA 1035 43.96 MLRDRKEMVKETAYYDVLGINLDASPADIKKAYYVKARVVHPDKNQGDPNAAEKFQVLGEAYQVLSDPEKREAYDKHGKEGIQPDSMLDPSAVFGMLFGSDLFEDYVGQLALATLASVETGDESQDPEARKQKIQEKIRSAQKERVEKLVGILTERLQRFVENPNGTDFVEWATSEAQHLSKAAFGEAMLHTIGYIYTRKAAKEIGKDIRYMKVPFLAEWVRDKGHLIKSQVMAASGAVSLIQIQEDLKKLNQGENSEESVEKAIEEKKDAMLNSLWQINVVDIESTLSHVCRAVLREPGMDKDVLKLRAKALKTLGTIFQGAKAPYSRANSLRHEEVEAPPLA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10296926 10299749 + Conep08aG0125100.1 Cone8ag1214 443763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1214 344 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 8 335 IPR052423 -
Cone8ag1214 344 SMART dnaj_3 12 70 IPR001623 -
Cone8ag1214 344 Pfam DnaJ domain 14 75 IPR001623 -
Cone8ag1214 344 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Cone8ag1214 344 CDD DnaJ 14 67 IPR001623 -
Cone8ag1214 344 Gene3D DnaJ domain 2 91 IPR036869 -
Cone8ag1214 344 PRINTS DnaJ domain signature 15 33 IPR001623 -
Cone8ag1214 344 PRINTS DnaJ domain signature 33 48 IPR001623 -
Cone8ag1214 344 PRINTS DnaJ domain signature 50 70 IPR001623 -
Cone8ag1214 344 PRINTS DnaJ domain signature 70 89 IPR001623 -
Cone8ag1214 344 ProSiteProfiles dnaJ domain profile. 13 78 IPR001623 -
Cone8ag1214 344 Pfam X-domain of DnaJ-containing 142 333 IPR026894 -
Cone8ag1214 344 SUPERFAMILY Chaperone J-domain 8 107 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1214 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1479 Cone-Chr12:10570980 Cone8ag1214 Cone-Chr8:10296926 1.49E-10 dispersed
Cone20ag0410 Cone-Chr20:1988766 Cone8ag1214 Cone-Chr8:10296926 8.32E-109 dispersed
Cone6ag1557 Cone-Chr6:12189503 Cone8ag1214 Cone-Chr8:10296926 1.74E-13 dispersed
Cone8ag1214 Cone-Chr8:10296926 Cone9ag1474 Cone-Chr9:10890100 2.95E-15 dispersed
Cone8ag1214 Cone-Chr8:10296926 Cone17ag0805 Cone-Chr17:6367797 3.61E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g346 Blo02g00811 . . Bda08g00944 . . Bma05g00437 . . . Cma02g00379 Cma20g00831 Car02g00246 Car20g00716 . . . . . . . . . . . . . . . . . . Cone8ag1214 . . Lsi10g00394 . Chy11g00360 . . . . . . . . . . Cmo02g00386 Cmo20g00840 . . . . Cpe16g00258 Cpe05g01276 Bhi10g01979 Tan05g1273 . . Hepe08g0997 . . . . . . . . . . Csa02g01283 . Cme11g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 7 1 42