Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1217 ATGGAAGTAGCTGGCGTTGATATTTATCCCAGGACTTATTCCACTTCAAATGGGCTGCATTCCAGTCAACATAAAAGATTGAAAGTATCCAGTGGTGGAAAAGATCATGCTAGGTCTGATTTTCCTGCACAAATGGATAATGAAATTGAGCAGAAGACACCACAAACGTCGTCGAAAGTAATTGACTACACTGATCCATTTGCAGTTTCTAAGTTGCTGGAACGTTTAGATGGTGGCAAGTACGGAAGTGTTACTAAAGAGATAGATTCGCTTCTTACTTGGAAGACGCAAGTACTGAACCCATTAATTGTGAAGTATCCTGCACTTTCAAATATAATACAGGGTAAAGAGTGCTCAAAATTAGAAATTCCAGAAGGTTCTGACTCGGTAAATAACAATGTAATCGATTTGGAGGATGACTCTGCCAAAAATGGTCTTGCAAACGCTGTTTTGGGAAAAAGTCAGCCTATTGTCATTATTGATTCAGACGAGGAAGACAACGAAGAACGAAAACCAAGCTATCCTTTTGAAGGGATCATTTTGCCGAGAGGGTCTGGGGAATTTTTTATGAAAGATATAGTGGATATTCATTCACTGGGGGCACTTGAATATAACAGAGTTCTAAGAGGAGAGGAAGCATCACTGCCTACTGAAACACTCGTAATCAAGAAAGAGAAAGATAAAGGTGTTTACGTTGGCGTGGAAGACGAAGCTGACCAGCTGACTGAAATTGAAGATGATGGCCTGGGAGATATCTGGATAGAAATGAATATAGCATTGGAGTGTTCCAAGGATGTCGTTGCAGATCCATCATCTCCCGAACAAGAATCTGATGTTGACGAAGACTGTGATCATTCTTTTGTGTTGAAGGATGATCTTGGCTATGTCTGTCGAATTTGTGGGGTCATTGATAGAGGCATTGAGACAATATTCGAGTTTCAATATAATAAGGTCAAGCGGAGCACACGTACTTATTCATCCGAGTCTCAAGATGCTGTGGACAAAGAATCAGGGGAGATCTATAAAATTTCAGGGGATGATTTGAAAATAACTGAAATCACTGCTCACCCACGGCATTTGAAGCAAATGAAAGTGCATCAGATGGAGGGTTTCAATTTCCTTGTCAGCAACTTAGTGGGTGATAATCCTGGTGGCTGCATTTTAGCCCATGCTCCTGGATCTGGGAAAACTTTTATGATCATCAGTTTCATGCAAAGTTTCTTAGCCAAGTACCCACATGGTAGACCGTTGGTTATTCTTCCTAAAGGAATCTTGTCTACTTGGAAAGGGGAGTTTCAAAAATGGCAAGTAGAAGATCTTCCATTGTATGATTTTTACTCGGCCAAAGCAGAAAATCGAACCCAACAACTTGAAGTGTTGAAAAAGTGGGTTGAAAACAAGAGCATCCTTTTCTTGGGATACAAACAATTTGCGTCAATTGTCTTCGATGATGAAACAAGCAAAATATCTGCTTCTTGTCAAGAAATACTCCTCAAGGCACCTACTATTGTCATCATGGATGAAGGACATACTCCTCGAAATGAAGAGACAGACACATTACAATCTCTTGCAAAGATTCAGACACCTAGGAAAGTAGTACTGTCAGGGACTCTCTATCAGAACCATGTCAAGGAGGTTTTTAATATATTAAATCTTGTCCGTCCAAAGTTTATAAGATCAGAATCTTCCCGACCGATCGCTAAGCGGATCATGTCAAGAGTGGAGATATCCGGCAGAAAGCAGTTCAAAGGTGGTGGAGAGTCTACTTTCTATGACCTAGTGGAACATACACTTCAGAAGGACAAAGATTTTAGGAGGAAAGTGAATGTCATTCAAGATTTACGGGAAATGACTAGCAAGGTCCTTCATTATTACAAAGGAGATTCCCTCGAAGAGCTCCCTGGACTTGTTGATTTAACAGTTGTACTCAATCTTTGTCCCAAACTGAAGAAGGAGTGCGCTAAGTTAAAAAAACATACGAGGAGGAAGTTCAAGATAAGTTCTGTAGGAAGTGCTTTATTTCTACATCCAAAGCTGACTGTCTTCTCCGATAATTCTAAAGTAATTGATCATGAAATGGATGATTTTTTGGAGAAGATAGATCCACAAGATGGATTGAAGGCACGATTTTTTCTCAACATGATAAATTTATGTGAAGCATCCGGAGAGAAACTACTGGTTTTCAGTCAGTACCTTACCCCTTTGAAATTCTTAGAGAGATTGGTAGTGAAAACCAAGGGCTGGAATTTAGGAACAGAAATGTTTGTGATCACAGGAAACTCAGAAGCTGATCAAAGGGAATCAGACATGTACAAGTTTAACACGACTCCTAAAGCTAAAGTCTTCTTTGGCTCTATAAAAGCTTGTGGAGAAGGAATTTCTCTTGTGGGTGCTTCTCGGATAATCATATTGGATGTGCATCTTAACCCATCGGTGACCCGTCAAGCAATCGGACGGGCTTTCCGACCCGGTCAAACTAAGAAAGTGTTTACTTATAGATTAGTGGCTGCTGATTCACCCGAAGAAGAAGATCATGGTGCCTGCTTTGAGAAGGAATTGATCTCTAAGATGTGGTTTGAATGGAACGAGTATTGTGGGTATAGAGATTTCCAGGTGGAGACTGTGGATGTGAAAGAGTGTGGAGATCCCTTCTTTGATAGTCCGGCTTTAGCTCAGGACGTCAAAGTATTGTACAAAAGGTAA 2703 40.44 MEVAGVDIYPRTYSTSNGLHSSQHKRLKVSSGGKDHARSDFPAQMDNEIEQKTPQTSSKVIDYTDPFAVSKLLERLDGGKYGSVTKEIDSLLTWKTQVLNPLIVKYPALSNIIQGKECSKLEIPEGSDSVNNNVIDLEDDSAKNGLANAVLGKSQPIVIIDSDEEDNEERKPSYPFEGIILPRGSGEFFMKDIVDIHSLGALEYNRVLRGEEASLPTETLVIKKEKDKGVYVGVEDEADQLTEIEDDGLGDIWIEMNIALECSKDVVADPSSPEQESDVDEDCDHSFVLKDDLGYVCRICGVIDRGIETIFEFQYNKVKRSTRTYSSESQDAVDKESGEIYKISGDDLKITEITAHPRHLKQMKVHQMEGFNFLVSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPHGRPLVILPKGILSTWKGEFQKWQVEDLPLYDFYSAKAENRTQQLEVLKKWVENKSILFLGYKQFASIVFDDETSKISASCQEILLKAPTIVIMDEGHTPRNEETDTLQSLAKIQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFIRSESSRPIAKRIMSRVEISGRKQFKGGGESTFYDLVEHTLQKDKDFRRKVNVIQDLREMTSKVLHYYKGDSLEELPGLVDLTVVLNLCPKLKKECAKLKKHTRRKFKISSVGSALFLHPKLTVFSDNSKVIDHEMDDFLEKIDPQDGLKARFFLNMINLCEASGEKLLVFSQYLTPLKFLERLVVKTKGWNLGTEMFVITGNSEADQRESDMYKFNTTPKAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFTYRLVAADSPEEEDHGACFEKELISKMWFEWNEYCGYRDFQVETVDVKECGDPFFDSPALAQDVKVLYKR 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10310671 10314758 + Conep08aG0125400.1 Cone8ag1217 443766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1217 900 SMART helicmild6 740 824 IPR001650 -
Cone8ag1217 900 Gene3D - 329 583 IPR038718 -
Cone8ag1217 900 MobiDBLite consensus disorder prediction 15 56 - -
Cone8ag1217 900 MobiDBLite consensus disorder prediction 28 45 - -
Cone8ag1217 900 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 44 900 IPR044567 GO:0080188(InterPro)
Cone8ag1217 900 Pfam SNF2-related domain 366 560 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone8ag1217 900 CDD SF2_C_SNF 707 835 IPR049730 -
Cone8ag1217 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 562 IPR027417 -
Cone8ag1217 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 377 556 IPR014001 -
Cone8ag1217 900 Gene3D - 609 870 IPR027417 -
Cone8ag1217 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 878 IPR001650 -
Cone8ag1217 900 SMART ultradead3 359 573 IPR014001 -
Cone8ag1217 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 862 IPR027417 -
Cone8ag1217 900 Pfam Helicase conserved C-terminal domain 713 824 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1217 K10875 - - csv:101207775 1170.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0170 Cone-Chr5:706880 Cone8ag1217 Cone-Chr8:10310671 1.04E-69 dispersed
Cone8ag0437 Cone-Chr8:2740923 Cone8ag1217 Cone-Chr8:10310671 1.54E-87 dispersed
Cone12ag1170 Cone-Chr12:9283565 Cone8ag1217 Cone-Chr8:10310671 1.33E-56 transposed
Cone12ag1169 Cone-Chr12:9280140 Cone8ag1217 Cone-Chr8:10310671 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46712 PF06426 SATase_N 2.50E-37 No_clan Cone TR