Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1218 ATGGCTACTTACTACACAAGTTCAAATAATCCAAGAGACCCCACAGCCATGCTCTATTTACGGGACCCTCTCCTCAGTCCGTACACCGAATCACCTGCCAATCTCCATAACAACGTGTTGATGTTCACGAACAATTCTGGTCCCTACTCCTCCAACAACAACTCTGTTCAATTCCCATCTTTCGTGGGGCCTGCCTCCGGAACCAACCACCCAATGCAAGATGATGTCTTGCCCAATTTCGATTCTTGGAGGCATGCACAACAAGAACAGCAAGTAGGTGTGCTTAGTAGTAATGTTGTTCCGGGTCAAGGATTGTCGCTTTCGCTCGGGACACAAATCGGGCCAGGAATTCAAATGCATTCTTCCCATCCGGATTTAACGAGTTATACTGAGGAAGAGATGAGAGATGAAGATTTAATGTCTCAGTATGGAAAGTTTAGCGGTGTTATTGTTGCAAGAACAATTCCGAATTCTAAGTACCTCAAAGCAGCGCAGCGATTGCTCGATGAAGTTGTTAATGTTAGAAAAGCTCTCAAGCAGCAGCAATCTAATAACACTTTTACTGTTCAGAACAAACAAGATGATGGATCGAAAAATGTTGAAGAGCAATCAGCAAGTAATCCCAGGTCTGAGCTTTCGCATGCCGAAAAACAAGGTTTTCAGGAGAAACTGACTAAGCTATTGTCTATGTTGGACGAGGTTCATAGAAGGTACAGGCAGTACTATCATCAGATGCAGATCATTGTATCGTCTTTCGATTCAATAGCAGGACCCGGAGCAGCAAAATCATACTCGGCACTTGCGCTCCAGACAATTTCCCGTCATTTTCGATCTCTGCGTGATTCAATCGCTGCCCAAATTAAGGCTACCCGGAATAGCCTAGGGGATTATGATGATTTGGGGAACAATAAAGGAGTTGGAATAACTCGTCTTCGGTTTGTTGACCGGCAGTTAAGACAACAGTGGGCCCTACAGAAGCTCGGTATGATCCAACAACATGGTTGGAGACCTCAAAGAGGGCTGCCTGAAAGCTCAGTCACCATTCTCCGTGCTTGGTTGTTCGAGCATTTCCTTCACCCATACCCTAAGGATTCGGACAAGACCATGCTGGCAAGACAAACCGGTTTGACTAGAAGTCAGGTTTCGAACTGGTTTATAAATGCACGAGTACGACTTTGGAAGCCAATGGTAGAGGAAATGTACAAAGAAGAGATTGGAGAAGCAGAGATGGAATCTACTTCATCAATGGATAATCTAACTAAGGAAACAAATGATGGAAATAGAGCAACCTCCGAAGACAGAGAGGAAGATTTGCAACAAAGTGCAAGAAGTACAACACCGACCGAAAGGTACGGTGCCGGGCAATTTAGGGATTCCAAATTTGGTTCCATACCGGATGTGGAAATGGTGGGCTCTGCCGTTTTGGAAAGTTTCCCAGACTCAATGATTCAGTCTGATGGTGGGTCCTACCATTTGTCGGAATTAGGGAGGTTCAGGACCGGAAGTGGCATCTCACTGACCCTCGGCTTGCAGCATTGTGAGGGTAGTGGTAGTAGTAGCCTACCCATTTCTAGAGGGACCCACCAAGGGGTTTTTCAGATGAGAGGTGAAGACATTTACAATGGCGGGCTGCCATCTTCTGTTGGAGAAACAACTGATTTTGAACGGCTGAATAACGGTAACCAGCAACAACACGGATACGGTTCGTCCAGCATGTATCATGACTTTGTTGTGTGA 1737 45.6 MATYYTSSNNPRDPTAMLYLRDPLLSPYTESPANLHNNVLMFTNNSGPYSSNNNSVQFPSFVGPASGTNHPMQDDVLPNFDSWRHAQQEQQVGVLSSNVVPGQGLSLSLGTQIGPGIQMHSSHPDLTSYTEEEMRDEDLMSQYGKFSGVIVARTIPNSKYLKAAQRLLDEVVNVRKALKQQQSNNTFTVQNKQDDGSKNVEEQSASNPRSELSHAEKQGFQEKLTKLLSMLDEVHRRYRQYYHQMQIIVSSFDSIAGPGAAKSYSALALQTISRHFRSLRDSIAAQIKATRNSLGDYDDLGNNKGVGITRLRFVDRQLRQQWALQKLGMIQQHGWRPQRGLPESSVTILRAWLFEHFLHPYPKDSDKTMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGEAEMESTSSMDNLTKETNDGNRATSEDREEDLQQSARSTTPTERYGAGQFRDSKFGSIPDVEMVGSAVLESFPDSMIQSDGGSYHLSELGRFRTGSGISLTLGLQHCEGSGSSSLPISRGTHQGVFQMRGEDIYNGGLPSSVGETTDFERLNNGNQQQHGYGSSSMYHDFVV 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10314758 10317626 - Conep08aG0125500.1 Cone8ag1218 443767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1218 578 Gene3D - 330 409 - -
Cone8ag1218 578 Pfam Associated with HOX 155 284 IPR006563 -
Cone8ag1218 578 SMART HOX_1 335 399 IPR001356 GO:0003677(InterPro)
Cone8ag1218 578 CDD homeodomain 335 396 IPR001356 GO:0003677(InterPro)
Cone8ag1218 578 FunFam BEL1-like homeodomain protein 4 338 400 - -
Cone8ag1218 578 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 433 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone8ag1218 578 MobiDBLite consensus disorder prediction 411 425 - -
Cone8ag1218 578 MobiDBLite consensus disorder prediction 407 458 - -
Cone8ag1218 578 Pfam Homeobox KN domain 352 391 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone8ag1218 578 MobiDBLite consensus disorder prediction 183 217 - -
Cone8ag1218 578 ProSiteProfiles 'Homeobox' domain profile. 332 395 IPR001356 GO:0003677(InterPro)
Cone8ag1218 578 SMART prehox3 149 285 IPR006563 -
Cone8ag1218 578 SUPERFAMILY Homeodomain-like 336 402 IPR009057 -
Cone8ag1218 578 Coils Coil 161 184 - -
Cone8ag1218 578 MobiDBLite consensus disorder prediction 183 214 - -
Cone8ag1218 578 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0468 Cone-Chr13:5121282 Cone8ag1218 Cone-Chr8:10314758 3.94E-87 dispersed
Cone19ag0426 Cone-Chr19:3526526 Cone8ag1218 Cone-Chr8:10314758 8.97E-89 dispersed
Cone3ag0138 Cone-Chr3:763964 Cone8ag1218 Cone-Chr8:10314758 5.97E-86 dispersed
Cone7ag1851 Cone-Chr7:11987792 Cone8ag1218 Cone-Chr8:10314758 3.08E-86 dispersed
Cone8ag0284 Cone-Chr8:1635714 Cone8ag1218 Cone-Chr8:10314758 5.43E-73 dispersed
Cone8ag1218 Cone-Chr8:10314758 Cone9ag0798 Cone-Chr9:3829853 1.08E-68 dispersed
Cone12ag1171 Cone-Chr12:9284332 Cone8ag1218 Cone-Chr8:10314758 0 wgd
Cone4ag1938 Cone-Chr4:13683402 Cone8ag1218 Cone-Chr8:10314758 3.07E-75 wgd
Cone7ag1850 Cone-Chr7:11983330 Cone8ag1218 Cone-Chr8:10314758 4.71E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46713 PF06426 SATase_N 2.50E-37 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1218 - - - 0.0