Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1220 ATGAGATCGTCTTTTTGTACTAATTTCTTTCTACTTGCACTTCTTGTCGTTTCGGGTCTCGCAGCAGTCTGTAATGGAGGATCGACAAGTCGTTTTGTGAGGAGAGTTGAGAAGACTCTTGATATGCCTTTAGATAGTGATGTCTTCCAGCCTCCTCCCGGTTACAATGCCCCTCAACAAGTGCACATAACCCAAGGAGATCACGATGGCGAGGCAGTGATTGTTTCATGGATAACTCCGAAAGAAGAAGGGTCAAACGTCGTCGTTTACTGGACCCAAGAAAACAGCAATAAGAAGAAACAGGCTGTGGGCAAGAGTAATAGATACAAGTTCTATACTTACACCTCTGGTTACATTCATCACACCACTATCAGAAACTTGAAGTATGACACTAAGTACTACTACACGGTTGGGCTCGGCCACTCTCCCCGGACCTTCTGGTTCGTTACGCCTCCTAAAGTCGGTCCGGATGTCCCATACACCTTTGGTCTCATCGGGGATCTTGGTCAGAGTTATGATTCGAATAAGACGCTTACTCACTATGAATTAAACCCACAGAAAGGGAAAACTGTACTGTTTGTAGGGGATCTTTCTTATGCGGATAATTATCCGAATCATGACAATGCAAGATGGGATACATGGGGAAGATTTGTAGAGAGAAGTGTTGCTTATCAGCCTTGGATATGGACTGCTGGAAACCATGAACTTGATTTCGTCCCGGATATCGGTGAAAACAAACCGTTCAAGCCTTACACTAATCGTTTCCATGTTCCTTATAGAGCATCAAATAGTACCGCTCCGTTTTGGTACTCAATCAAGAGAGGACCGGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACCAATGGCTCGAGGCAGAGTTTCGAAAAGTCAACCGGTCCGAAACATCATGGTTGATTGTTCTAATGCACTCCCCATGGTATAATAGCTACAACTACCATTATATGGAAGGAGAGACCATGAGAGTACAGTATGAGGCGTGGTTTGTAAAGTATAAAGTCGATGTGGTCTTTGCGGGCCATGTCCATGCCTATGAACGATCGGAACGGGTTTCGAATATTGCATATAATGTAGTCAATGGACTATGTCTGCCCGTGAAAGATCAATCCGCACCCGTTTACATAACGATTGGGGATGGAGGGAACCTTGAAGGCCTTGCAACCAACATGACAGAGCCGCAACCAAAATACTCGGCTTACCGAGAAGCTAGTTTCGGTCATGCGATATTTGATATAAAGAACAGAACCCATGCTTACTACAGTTGGCATAGGAATCAAGATGGTTATGCAGTGGAAGCTGATACTTTGTGGTTTTTCAATAGATTCTGGAAACCAGAAGATGATTCAACGAGTGCTAACTCATGA 1407 43.92 MRSSFCTNFFLLALLVVSGLAAVCNGGSTSRFVRRVEKTLDMPLDSDVFQPPPGYNAPQQVHITQGDHDGEAVIVSWITPKEEGSNVVVYWTQENSNKKKQAVGKSNRYKFYTYTSGYIHHTTIRNLKYDTKYYYTVGLGHSPRTFWFVTPPKVGPDVPYTFGLIGDLGQSYDSNKTLTHYELNPQKGKTVLFVGDLSYADNYPNHDNARWDTWGRFVERSVAYQPWIWTAGNHELDFVPDIGENKPFKPYTNRFHVPYRASNSTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYQWLEAEFRKVNRSETSWLIVLMHSPWYNSYNYHYMEGETMRVQYEAWFVKYKVDVVFAGHVHAYERSERVSNIAYNVVNGLCLPVKDQSAPVYITIGDGGNLEGLATNMTEPQPKYSAYREASFGHAIFDIKNRTHAYYSWHRNQDGYAVEADTLWFFNRFWKPEDDSTSANS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10324613 10327194 - Conep08aG0125700.1 Cone8ag1220 443769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1220 468 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 155 463 - -
Cone8ag1220 468 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 57 154 - -
Cone8ag1220 468 CDD MPP_PAPs 156 454 IPR041792 -
Cone8ag1220 468 Gene3D - 155 464 IPR029052 -
Cone8ag1220 468 Pfam Iron/zinc purple acid phosphatase-like protein C 385 442 IPR025733 -
Cone8ag1220 468 Pfam Purple acid Phosphatase, N-terminal domain 58 149 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone8ag1220 468 SUPERFAMILY Metallo-dependent phosphatases 156 462 IPR029052 -
Cone8ag1220 468 PANTHER ACID PHOSPHATASE RELATED 7 459 IPR039331 GO:0003993(InterPro)
Cone8ag1220 468 SUPERFAMILY Purple acid phosphatase, N-terminal domain 39 152 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone8ag1220 468 Pfam Calcineurin-like phosphoesterase 161 359 IPR004843 GO:0016787(InterPro)
Cone8ag1220 468 CDD FN3 56 137 IPR003961 GO:0005515(InterPro)
Cone8ag1220 468 Gene3D - 57 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1220 K22390 - - rcu:8284339 823.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0351 Cone-Chr20:1564810 Cone8ag1220 Cone-Chr8:10324613 1.13E-182 dispersed
Cone4ag0649 Cone-Chr4:3071533 Cone8ag1220 Cone-Chr8:10324613 1.29E-30 dispersed
Cone6ag1658 Cone-Chr6:12642001 Cone8ag1220 Cone-Chr8:10324613 3.92E-218 dispersed
Cone7ag0608 Cone-Chr7:2960490 Cone8ag1220 Cone-Chr8:10324613 4.74E-194 dispersed
Cone8ag1220 Cone-Chr8:10324613 Cone9ag1583 Cone-Chr9:11362368 1.04E-104 dispersed
Cone12ag1174 Cone-Chr12:9296505 Cone8ag1220 Cone-Chr8:10324613 1.47E-226 wgd
Cone17ag1369 Cone-Chr17:9537564 Cone8ag1220 Cone-Chr8:10324613 1.33E-255 wgd
Cone20ag0110 Cone-Chr20:496952 Cone8ag1220 Cone-Chr8:10324613 1.20E-33 wgd
Cone6ag1657 Cone-Chr6:12638475 Cone8ag1220 Cone-Chr8:10324613 8.67E-241 wgd
Cone8ag1220 Cone-Chr8:10324613 Cone9ag1581 Cone-Chr9:11354951 4.90E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1174 Cone8ag1220 . . . Csa07g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97