Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1222 ATGATGAGAGGAGAAGAAATGATAACAGGTGGATCAGCATCATCATCATTATCAAGCAGGTGCCAAGATTGTGGAAACCAAGCTAAGAAGGAGTGTTTGTTCATGAGATGCAGAGCTTGTTGTAAAAGCAAAGGGTTTCAGTGCCAAACCCACGTCAAAAGCACTTGGATTCCGGCCCACCACCGCCGCCACAGTCAGCAGCAGCAGCTGCCGCCGCCGGCATCTCTTCCCCCTCCACCACACCTTCAAAACCCTAAAAGGTTCAGACACCTTAATTCCTCACTCTCATCACCAGCGGAAGTGAATTCAATGGCCGAATTTCGTTGCCTACGAATGAGCTCAGTTTATAATGGAGTACATGAGTATGCGTATGAGACATCTGTGAATATTGGAGGGCATGTATTTAAAGGCATTCTTTACGATCAAGGTCCTCTAAATTGTTCCGTTAATTACCCCGTCGATAGCTCATCTGCCGCTCTCGGCAGTGCAGTAGCTGGTAGTGGTGGTGCAGCCGTTACTGCTTCCATTTCAGGCGCTGTAAAACCTCTACTTCCTCATCCTCTTCCTCTTCCTACTCCATTACTAAACACTTTCTTGTGTAATGCACAATTTTTGCCGCACTCAAAATCCTAA 633 46.76 MMRGEEMITGGSASSSLSSRCQDCGNQAKKECLFMRCRACCKSKGFQCQTHVKSTWIPAHHRRHSQQQQLPPPASLPPPPHLQNPKRFRHLNSSLSSPAEVNSMAEFRCLRMSSVYNGVHEYAYETSVNIGGHVFKGILYDQGPLNCSVNYPVDSSSAALGSAVAGSGGAAVTASISGAVKPLLPHPLPLPTPLLNTFLCNAQFLPHSKS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10333267 10334202 - Conep08aG0125900.1 Cone8ag1222 443771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1222 210 NCBIfam LRP1 C-terminal domain 98 144 IPR006511 -
Cone8ag1222 210 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 174 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone8ag1222 210 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag1222 210 Pfam Domain of unknown function (DUF702) 19 144 - -
Cone8ag1222 210 MobiDBLite consensus disorder prediction 59 86 - -
Cone8ag1222 210 NCBIfam putative zinc finger domain, LRP1 type 21 62 IPR006510 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1222 K27807 - - rcu:8284344 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1177 Cone-Chr12:9305921 Cone8ag1222 Cone-Chr8:10333267 7.38E-39 transposed
Cone12ag1176 Cone-Chr12:9305353 Cone8ag1222 Cone-Chr8:10333267 4.29E-52 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone8ag1222 Cone-Chr8:10333267 9.98E-38 wgd
Cone20ag0106 Cone-Chr20:478496 Cone8ag1222 Cone-Chr8:10333267 1.47E-37 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone8ag1222 Cone-Chr8:10333267 6.33E-33 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone8ag1222 Cone-Chr8:10333267 1.67E-41 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone8ag1222 Cone-Chr8:10333267 1.29E-32 wgd
Cone8ag0832 Cone-Chr8:8313349 Cone8ag1222 Cone-Chr8:10333267 6.81E-35 wgd
Cone8ag1222 Cone-Chr8:10333267 Cone9ag1584 Cone-Chr9:11367151 4.97E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023715 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46715 PF00240 ubiquitin 1.40E-21 CL0072 Cone TF