Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1226 ATGGAAATGGCAGCAGCAACTTCTTCGCCGGCTTCCCATCAGATCCACGGACATCTCCTTCTTCGTCGTCCATCCTCCATCAGTTTCTTCACCTCCTTTTCTATGCCTCTCTTCATCTCTTCTTCCATAACCACCGCCCCAACCTTGTCGAACTCTCCTCTTAAATCTAACACTTACGCAAACTTCACTCCTCGACACTCCCTACTCTTCCACTCTCTTGCTCACTCTGCCTCTGTCTCCTTCCCTCACTCCCTCTCTGCTTCTCATAGTTCCGAAGAAGATGAGGATAGTGAAATTGAGGATAGTGAAATTGAGCTTGATAGTGAAATTGAGCTTGGAAGCGAGGATTTGGAGCTTGTGGAAACTGTTAGTGATGGCTCTCAAACAGGCGTTGCCGTGGAGTCTTCTTCGTCGTTGAACACCAGTCCAGGGGAGCCACCAAAGCTATCGGTGAAGGAGAAGAAGGATTTAGCCTCGTACGCGCATAGCTTGGGGAAGAATCTCAAGTCTCAGCTGGTTGGAAAGTCCGGTGTGACGCCGGGCCTTGCCACATCTTTCATTGAAACGCTGGAAGCCAATGAGCTTCTCAAGATTAAGATTCACAGAACATGTCCAGGGGAGTTAGAAGATGTGGCCAAACTATTAGAGGAACAGACCGGTTCTGTGATTGTCAGTCAAATCGGCCGAACAATCATAGTGTTCAGGCCCAGCCTTTCGAAGTTGAAAGCACTAGAGAAAAAGAACGAGAATCGGCGAATTATCATGAGAAGGGCACAAGAACGAAAATCCGCATTACTGAATAAAGAACTATCACCAAGATCCTCTAACCGCGGACGTCGCGGAAGCAGCAGGTATTGA 858 48.14 MEMAAATSSPASHQIHGHLLLRRPSSISFFTSFSMPLFISSSITTAPTLSNSPLKSNTYANFTPRHSLLFHSLAHSASVSFPHSLSASHSSEEDEDSEIEDSEIELDSEIELGSEDLELVETVSDGSQTGVAVESSSSLNTSPGEPPKLSVKEKKDLASYAHSLGKNLKSQLVGKSGVTPGLATSFIETLEANELLKIKIHRTCPGELEDVAKLLEEQTGSVIVSQIGRTIIVFRPSLSKLKALEKKNENRRIIMRRAQERKSALLNKELSPRSSNRGRRGSSRY 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10357270 10359413 + Conep08aG0126400.1 Cone8ag1226 443775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1226 285 MobiDBLite consensus disorder prediction 264 285 - -
Cone8ag1226 285 MobiDBLite consensus disorder prediction 123 145 - -
Cone8ag1226 285 SMART CRS1_YhbY_2 149 235 IPR001890 GO:0003723(InterPro)
Cone8ag1226 285 Coils Coil 241 261 - -
Cone8ag1226 285 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 3 284 - GO:0009507(PANTHER)
Cone8ag1226 285 Pfam CRS1 / YhbY (CRM) domain 149 235 IPR001890 GO:0003723(InterPro)
Cone8ag1226 285 MobiDBLite consensus disorder prediction 123 153 - -
Cone8ag1226 285 SUPERFAMILY YhbY-like 149 237 IPR035920 -
Cone8ag1226 285 ProSiteProfiles CRM domain profile. 147 246 IPR001890 GO:0003723(InterPro)
Cone8ag1226 285 FunFam RNA-binding CRS1 / YhbY (CRM) domain protein 148 247 - -
Cone8ag1226 285 Gene3D - 148 247 IPR035920 -
Cone8ag1226 285 MobiDBLite consensus disorder prediction 84 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1226 K07574 - - mdm:103445126 187.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1181 Cone-Chr12:9334728 Cone8ag1226 Cone-Chr8:10357270 2.34E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g22 . . . . . . . . . . . . . . . Cpe04g00105 . . . . . . . . Cla02g00490 Cam02g0499 Cec02g0500 Cco02g0506 Clacu02g0503 Cmu02g0499 Cre02g0831 . Cone8ag1226 . . . Csa07g00029 . Cme01g01351 . . Bda15g01072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01134 . Chy01g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010229 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32