Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1227 ATGGAGAGCGTGGAAGCAGCGAGGGCTTTGAAGTCAAGTTTGCGGTGGGAATTGGCTACGAAATTGACTAAGCCGGTGTTTTTTGACGAGTTTCCCGTAAGAATTTCTTCTGGTGAGGGTAACGTGGTCGCCGGCGAAGATTTTCCGGTGGAGGACTTCCTTAATTTTTCGAACGAAGAATTCGAACTGGGCTCTGTAGAGGATGTGGTAGAAGCAGAGGAAGAATATGACGAGGACGAAGAACAAGAGGAAAAGGATAGTCCCTCTGTTTCTTCTTCTCAGGAGGCAGCCGACGACGACTCTGCTTCTCTTCTCGACGCTGGACTTGCTGTTCCGGGAGATTGCTTGTCAGAACTTGAATGGGTTTCCCAGTTCGTGGAAGATTCTCCTCTGGACTTTTCTCTTGTGTTTCCGGTTTATCAAACGACGAAGAACCACACTCCGGCGGAGAACCGGTCCGAACCGGAGCGAAGACAAATTAATGCAGCCGGACGCTCGTATTTTCCTTCACCCATTCCGGCCCGGCCCAGAACCAAACGGTCCAGAACGAGTCGAGTCTGGTCACTCGGTTCCCCACTCTCCGAGTCATCTTCAACGCCTGGGTTTTTCTCAACCCCATGCCTCCTCTTCCCCAACACGGTCCAGAACCTGGACCTGTTTAACAGCATAAGCGAGCTTCCCTCGAAGAAGCAGAAAAAGAAACCATCGTTTCAAACCGGTGGGACCGCACAGTTTCAACGGCGGTGCAGTCATTGTCAAGTCCAGAAGACACCACAGTGGAGAACCGGACCACTCGGCTCCAAAACGCTCTGTAACGCTTGTGGAGTTAGGTACAAATCCGGTCGGCTCTTTCCAGAATATAGACCGGCCTGCAGCCCAACGTTTTCCGTCGAAGTTCACTCCAATAGCCACCGTAAGGTGTTGGAGATGAGGAAGAGGAAGGAGATTTCTGGACCGAGTTTATAA 966 51.35 MESVEAARALKSSLRWELATKLTKPVFFDEFPVRISSGEGNVVAGEDFPVEDFLNFSNEEFELGSVEDVVEAEEEYDEDEEQEEKDSPSVSSSQEAADDDSASLLDAGLAVPGDCLSELEWVSQFVEDSPLDFSLVFPVYQTTKNHTPAENRSEPERRQINAAGRSYFPSPIPARPRTKRSRTSRVWSLGSPLSESSSTPGFFSTPCLLFPNTVQNLDLFNSISELPSKKQKKKPSFQTGGTAQFQRRCSHCQVQKTPQWRTGPLGSKTLCNACGVRYKSGRLFPEYRPACSPTFSVEVHSNSHRKVLEMRKRKEISGPSL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10361651 10363066 + Conep08aG0126500.1 Cone8ag1227 443776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1227 321 ProSiteProfiles GATA-type zinc finger domain profile. 247 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1227 321 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1227 321 FunFam GATA transcription factor 239 320 - -
Cone8ag1227 321 MobiDBLite consensus disorder prediction 64 101 - -
Cone8ag1227 321 PIRSF Txn_fac_GATA_plant 17 320 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cone8ag1227 321 MobiDBLite consensus disorder prediction 166 185 - -
Cone8ag1227 321 Gene3D - 241 316 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone8ag1227 321 CDD ZnF_GATA 248 297 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1227 321 SMART GATA_3 243 293 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1227 321 MobiDBLite consensus disorder prediction 64 85 - -
Cone8ag1227 321 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1227 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 306 - -
Cone8ag1227 321 PANTHER GATA TRANSCRIPTION FACTOR 47 315 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1227 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0342 Cone-Chr5:1458803 Cone8ag1227 Cone-Chr8:10361651 2.60E-35 dispersed
Cone7ag0368 Cone-Chr7:1597065 Cone8ag1227 Cone-Chr8:10361651 2.65E-34 dispersed
Cone8ag0811 Cone-Chr8:8162764 Cone8ag1227 Cone-Chr8:10361651 3.34E-09 dispersed
Cone12ag1182 Cone-Chr12:9338953 Cone8ag1227 Cone-Chr8:10361651 2.60E-183 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46716 PF00996 GDI 9.30E-31 CL0063 Cone TF