Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1230 ATGGAAGCGGAAGAAGATGAGAATTTGAACATCGATAGACCTTCTCATCAAGTTGTGGACGCCTCTGCTTGTGACTCCCATGTTAAGCTTGAGAGCACCGAACAGAAATACGAACTTGAGGGGGGGGAAGCTGTTGTGATGGAAGATACGGTGCTGGAGGAGAAGGTTGTGGATGACTTGGCGACGGAGCAAAAAGTATTAGCTGATGTGATGGAGGATACGGTAGTGGAGGAGAAGCCTGTGGTTGACTTCGCCGGGGAGGAAAACGTTGTAGCTTTTGCGATTGAGGATGCAGTGGTGGAGGAAAAAGCCGCGGATGACATGGCAGGAGAGCAAAACGTTGTAGCTGATGTGGTGGAGGATACTGTGGTAGAGGAGAAGGCCTTGGATGATATGGCTGGTAAGCAACATATCGTAGCTGATTTGATAGAGGAGAAGGTCGGGGCTGACTTGGTGGGGGAGCAAAATGCTACAGCTGATGGGATGGTGAATATGGTGATGGAGGAAAAGGTTGTGGCTGACTTGGCAGAGGGGAAGGAGGCAGAGCAGATTGTCGTGGCTGGCTCAGTGGAGGAGGTAGAGCAAGTTGTTGCAGCGGGCTCGACTGCTGAGACTTTTGTCGCTGAAAGCCCAGAGAAAGAGGAAATTGAAGGGGGGTCATATTTGATGGGTGATGCAGAGAAGGAATGGGCTGAGGGGATAGGTGTGGCTCATGAAGTGGAGGATATTAAACAGGATACGGATGATGGTGTGCAGGATAAGGATGCGGTATTGGGCCTCCCTGATGCGGATGAGAAAGGTCACATGCCTGAAGTGGCCGAGAATATAGATGTTGCAGAGCAATCCAACTTTTTTATGGAGAAGGATTCAGTCGTACTACAGCAATTGGCAGAGAAGGAGAAGGAAGAGGTGATTGGAGCTGATTCTGCAGATGAGAGTGTTAAAGAGGAGGAAGTGGCGAAGCTGCCTAATGGGCCTGAAAAGACTATTGAAGTTGTGATCGTGAAAGACGAGACTGCACAGACAGAGGAAATGGATTTTGGGGAAGACTTAACACCTAAGCCAGATGATGATGCTGAAGATGATAATTCAGACGCAAAGGAGATGACTAAAATGGCTGATGAGACTACAGAGACAGAGAAGATGCACAATGACGTGGATGGGATAATGGAGGTGGAGGAGATGGAAGCTGACAAAGCTAATATGGTTGGGGAGACAACAGAGACAGAGGAGATGGAAGCAGTAGATGAGGCGGAGGAGATGGAAGCAGTTGATGAGGCTGAGGAGATAGAAGCAGGAGATGGGGCAGAGGAGGTGGAAGTGGTTGAGGAAGCAAGTACCAACAATGGAAGTAAAAAGAAGCGAGGAAAGAATTCGAAGTCTCTGGAAAAAGTGCCATCAAAGAAAAAAATGGAAGAGGATGTTTGCTTCATTTGCTTTGATGGTGGTGAACTAGTGCTCTGTGACCGCAGGGGCTGCCCTAAGGCTTATCATCCTTCTTGTGTCAATAGGGATGATGCTTTTTTCAAAGCCAAGGGTCGATGGAATTGTGGCTGGCACCTCTGTAGCAAATGTGAGAAGACTGCGTACTATATGTGTTTTACATGTACGTTTTCCTTGTGCAAGAGCTGCACTAAAGATGCAGTATTCTTGTGTGTTAGAGGAAACAAAGGTTTCTGCGAGACGTGCATGAAAACTGTCATGTTGATCGAACAGAAGGGGCAGGAGAATGCAGAAGTGGCTCAAGTTGATTTTGATGACAAAAGTAGCTGGGAGTATCTTTTCAAGGATTATTGGACCGACCTAAAAGGCAGGCATTCTATAACTTTTGATGAACTTACTCGGGCCAAAAATCCTTGGAAGGGAAGTGATACATCTGTAGGTAAACTAGAATCTGCTGATGAACTTTATGATGCTAATGCTGATGGTGGCTCAAATTCAGACAGTCCTGAAAATCTAGAACTTAGTAGCTCTAAGAAAAGGAAAACCAAGAAAAGATTGAAGTCCCATGCAAAGGAAAAGGAACCACCTAAAAGGTCGAGACTAACTGGTTCACAGGGGCAATCCACAACTGGAAGCGTTGAGTGGGCATCAAGAGAGCTTTTGGAGTTTGTTATGCATATGAGAAATGGGGACAAATCTGTTTTGTCTCAGTTTGACGTGCAGGCGCTTTTGCTAGAATACATAAAAAGAAATAAGCTGCGTGATCCTCGCCGGAAAAGTCAAATAATATGTGATTCAAGGTTTGAAAATTTGTTTGGGAAGCCACGTGTGGGGCATTTTGAAATGTTAAAGCTTCTCGAGTCCCACTTTCTTATAAAAGAGGATTCCCAGGTGGATGATTTTCAAGGCAGTGTTGTTGACACTGAAGCTAGTCAATTAGAGGCTGATGTGAAGGCTGGGAAAGACAGGAAACGTAAAGCACGTAAGAGGAGTGATGGGCGAGGGCCGTCCTCTAATCTCGAGGATTATGCTGCCATTGATAAACACAACATTAGTTTGATCTATTTAAAGCGTAGTTTGGTGGAGGATCTTCTGGACGATATGGTAAAGTTTCATGATAAGGTTGCTGGTTCTTTTGTGAGGATAAGGATATCAGGTAGTGCACAAAAGCAAGATTTGTATAGGCTGGTCCAGGTTGTAGGTACATGCAAAGCTGGAGAGCCTTATAAAGTTGGTAAAAAGATAACAGATACTATGCTGGAGATACTGAATCTAAACAAGACAGAGATCATATCAGCAGATATTATTTCAAACCAAGAGTTTACCGAGGATGAGTGCAAGCGTCTCCGTCAGAGCATAAAATGTGGTCTGCTCAACCGACTCACTGTGGGTGACATTCATGAAAAAACAATGGCACTGCAAGAAGTAAGAGTGAAAGACTGGCTGGAAACAGAGATAGTCCGCCTCAGTCATCTTCGTGATCGAGCTAGTGAGAAAGGGCGTAGGAAGGAGCTCAGAGAATGTGTAGAAAAGTTGCAGCTTCTGAAGACACCCGAGGAACGGCAGCGTAGGTTAGAGGAAACTCCAGAAATTCATGTTGATCCGAAGATGGATCCAAATCATGAGTCGGAAGAAGAGGAAGAAACAGAAGAAAAGAAACAAGAAAGCTTCATCCGTCCAAGAGGCACTGGCTTTGGAAACAGAACAAGGGAGCCCATTTCTCCTCGGGTGGGTGGCTCTGCAATGAGCAATAGCTGGAGTGGGATGAGAAACTTTTCCACCCCAACTCGGGAATTGAACAGAAACTTGTCTAACAAAGGGTTCTACAACAAAGTGGACGATTCTACAGGCTCTGGAGAAATAGTAAATGAAAATGCCTGGGATCAAGGAAGAGAAATTGACGTGCAATCAAGGAGTTTAGAAAAGCAACAACATTCTTTGAGCTCAGAAACCGTTGTCAGAAACACTCAACCTGCGGTAGCGTCTAGTTTATCTTCTGCTGGTACATCACAAACTCCAGTCCCACCTGCTACCAAAATCAATGAATCAGAGAAAATGTGGCACTACAAGGATCCATCTGGGAAGATACAGGGGCCATTCTCTATTGTGCAACTGCGAAAGTGGAGTAACAATGGCTACTTTCCTTCGGACTTGAGAATCTGGAAAGCCGCTGAGGAGCCAGATGATTCCATACTTCTGAATGATGCCTTGGCTGGAAAGTTCCAGAAAGAGACTTCATTGGGGAACAATTCACACCTCTCCCCCTTGTTTTCTGGGAAACCTCATGGAATGGCATTACAGCACGGTGTAGAAGTTCAGAATCCTAGAGCATCCACTATACATGAGAATCTAGGCTCTTCTGATACATCTGCAGCAGGAAATTTGAGATCTCAGAACGAAGTTTCTTCCTCAGCTGGAAGGGCTGCTACTTCAATTGACTTTCCAAAGTACTCGACAGACTACAATAGTAGAAATGACTCAACAAACCTCCCTTCACCTACTCCAAGCCCAAGTAGGCCCATGGGCCGTCCAGCTCAACCAGCTACCTCAGTTTTGGGTTTGCAACATAATGCAGCATTTATAGCTGAGAGTCCAACCCCCAAGGCAGACACTCCTCAAATGCACTCTCAACCAATAGTGGCTGCACCTCTTTTGCCCGATGGATCAATGAACCCAGCAGCTGATATAAAGAGCATTAGTGCAAATCTCCAAAGCTTGGTTCAATCTATAAGTAACCGTAATCCCTCTACTGCAAATCAAGGATGGGGGTCTAGTTCAGTTTCAGCTCCAGAAATGAACGTTTCAGGTCAAACATCTGGAAATGCATCTAGATCCTGGGGAACTGCACAATCTCCAAGAGTGGAGCAGAATAACTCTTCTAATGTGCCCTCACAACTTCCCCATAGTCGGTGGGGGGACCCACTATCTACCCAAAATTCCGCTCCATCTTACAATTCTGGAACTGTTGCAGGGAACTTTGCAACAACTGTTTATTCCAGTTTGCCTCAAGCTGATCCTTGGAGACCTTCCGTTCCTGCCAATCAGCCAGTTGTCCAGGCCTCAGCTTCAGCTAATCTTCCTTGGGGTGTGGTCGCTCCGGATAACCAAAGTGCTACTCCTAGACCAACAGGGATAGAGAGTCAAAACTGGGGCCCAATCCCGGGAAATCCAAACATGGGCTGGGCTGGACAGGTACCTGGAAATGCCAACCTAGGGTGGGGTGCTCCTGGACAGAGCCCTGGACCTGGTAATGCAAATCCTATTTGGGTTCCACCTGCAAATTCCGTTCCGGGATGGGTCCCTCATAATCAAATGCTGGCTCCACCTGTTAATATGAATCAAGGTTGGATTGCTCCTCCTGCTCAAGCACTGCCACCTGGAAATACGAATTCCGGTTGGGGCCCGCCTCCTACTGGGAATCAGGCAGGTATGTGGGGAAGCGAACAAAACAACAATGTAGATAGAACTTCTCAAGGTGGAAATTCTGGTTATGGTGGGGGTAAACCTTGGAACAGGCAGTCATCTTTTGGTGGTGGTGGAGGAGGAGGATCTTCTTCAAGGCCTCCTTTGAAAGGACAAAGAGTGTGCAATTACCATAAGAACGGACATTGCAAGAAGGGAGCTGCGTGCGATTACCTGCACACTTGA 5091 46.3 MEAEEDENLNIDRPSHQVVDASACDSHVKLESTEQKYELEGGEAVVMEDTVLEEKVVDDLATEQKVLADVMEDTVVEEKPVVDFAGEENVVAFAIEDAVVEEKAADDMAGEQNVVADVVEDTVVEEKALDDMAGKQHIVADLIEEKVGADLVGEQNATADGMVNMVMEEKVVADLAEGKEAEQIVVAGSVEEVEQVVAAGSTAETFVAESPEKEEIEGGSYLMGDAEKEWAEGIGVAHEVEDIKQDTDDGVQDKDAVLGLPDADEKGHMPEVAENIDVAEQSNFFMEKDSVVLQQLAEKEKEEVIGADSADESVKEEEVAKLPNGPEKTIEVVIVKDETAQTEEMDFGEDLTPKPDDDAEDDNSDAKEMTKMADETTETEKMHNDVDGIMEVEEMEADKANMVGETTETEEMEAVDEAEEMEAVDEAEEIEAGDGAEEVEVVEEASTNNGSKKKRGKNSKSLEKVPSKKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDDAFFKAKGRWNCGWHLCSKCEKTAYYMCFTCTFSLCKSCTKDAVFLCVRGNKGFCETCMKTVMLIEQKGQENAEVAQVDFDDKSSWEYLFKDYWTDLKGRHSITFDELTRAKNPWKGSDTSVGKLESADELYDANADGGSNSDSPENLELSSSKKRKTKKRLKSHAKEKEPPKRSRLTGSQGQSTTGSVEWASRELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRFENLFGKPRVGHFEMLKLLESHFLIKEDSQVDDFQGSVVDTEASQLEADVKAGKDRKRKARKRSDGRGPSSNLEDYAAIDKHNISLIYLKRSLVEDLLDDMVKFHDKVAGSFVRIRISGSAQKQDLYRLVQVVGTCKAGEPYKVGKKITDTMLEILNLNKTEIISADIISNQEFTEDECKRLRQSIKCGLLNRLTVGDIHEKTMALQEVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEETPEIHVDPKMDPNHESEEEEETEEKKQESFIRPRGTGFGNRTREPISPRVGGSAMSNSWSGMRNFSTPTRELNRNLSNKGFYNKVDDSTGSGEIVNENAWDQGREIDVQSRSLEKQQHSLSSETVVRNTQPAVASSLSSAGTSQTPVPPATKINESEKMWHYKDPSGKIQGPFSIVQLRKWSNNGYFPSDLRIWKAAEEPDDSILLNDALAGKFQKETSLGNNSHLSPLFSGKPHGMALQHGVEVQNPRASTIHENLGSSDTSAAGNLRSQNEVSSSAGRAATSIDFPKYSTDYNSRNDSTNLPSPTPSPSRPMGRPAQPATSVLGLQHNAAFIAESPTPKADTPQMHSQPIVAAPLLPDGSMNPAADIKSISANLQSLVQSISNRNPSTANQGWGSSSVSAPEMNVSGQTSGNASRSWGTAQSPRVEQNNSSNVPSQLPHSRWGDPLSTQNSAPSYNSGTVAGNFATTVYSSLPQADPWRPSVPANQPVVQASASANLPWGVVAPDNQSATPRPTGIESQNWGPIPGNPNMGWAGQVPGNANLGWGAPGQSPGPGNANPIWVPPANSVPGWVPHNQMLAPPVNMNQGWIAPPAQALPPGNTNSGWGPPPTGNQAGMWGSEQNNNVDRTSQGGNSGYGGGKPWNRQSSFGGGGGGGSSSRPPLKGQRVCNYHKNGHCKKGAACDYLHT 1696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10370478 10379397 - Conep08aG0126800.1 Cone8ag1230 443779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1230 1696 Pfam GYF domain 1168 1208 IPR003169 GO:0005515(InterPro)
Cone8ag1230 1696 SUPERFAMILY FYVE/PHD zinc finger 458 521 IPR011011 -
Cone8ag1230 1696 Gene3D SWIB/MDM2 domain 684 780 IPR036885 -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 797 820 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 638 693 - -
Cone8ag1230 1696 CDD GYF 1165 1220 IPR003169 GO:0005515(InterPro)
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 364 380 - -
Cone8ag1230 1696 Pfam Plus-3 domain 831 934 IPR004343 GO:0003677(InterPro)
Cone8ag1230 1696 ProSitePatterns Zinc finger PHD-type signature. 476 536 IPR019786 -
Cone8ag1230 1696 SMART rtf1 826 936 IPR004343 GO:0003677(InterPro)
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1393 1465 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 303 322 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1121 1158 - -
Cone8ag1230 1696 ProSiteProfiles Plus3 domain profile. 826 959 IPR004343 GO:0003677(InterPro)
Cone8ag1230 1696 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 393 1696 - -
Cone8ag1230 1696 FunFam Zinc finger CCCH domain-containing protein 19 465 565 - -
Cone8ag1230 1696 Gene3D - 1166 1224 IPR035445 -
Cone8ag1230 1696 SUPERFAMILY SWIB/MDM2 domain 694 772 IPR036885 -
Cone8ag1230 1696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 568 IPR013083 -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1000 1068 - -
Cone8ag1230 1696 Pfam SWIB/MDM2 domain 699 771 IPR003121 -
Cone8ag1230 1696 ProSiteProfiles Zinc finger C3H1-type profile. 1671 1696 IPR000571 GO:0046872(InterPro)
Cone8ag1230 1696 Gene3D - 827 957 IPR036128 GO:0003677(InterPro)
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1600 1675 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1261 1313 - -
Cone8ag1230 1696 Coils Coil 791 811 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1000 1023 - -
Cone8ag1230 1696 CDD Bbox1 521 547 - -
Cone8ag1230 1696 SUPERFAMILY GYF domain 1159 1218 IPR035445 -
Cone8ag1230 1696 ProSiteProfiles SWIB/MDM2 domain profile. 690 773 IPR003121 -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 430 465 - -
Cone8ag1230 1696 CDD SWIB-MDM2_like 696 771 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 338 380 - -
Cone8ag1230 1696 ProSiteProfiles Zinc finger PHD-type profile. 473 539 IPR019787 -
Cone8ag1230 1696 ProSiteProfiles GYF domain profile. 1165 1219 IPR003169 GO:0005515(InterPro)
Cone8ag1230 1696 SMART PHD_3 475 521 IPR001965 -
Cone8ag1230 1696 FunFam Zinc finger CCCH domain-containing protein 19 827 956 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1118 1158 - -
Cone8ag1230 1696 SUPERFAMILY Plus3-like 827 956 IPR036128 GO:0003677(InterPro)
Cone8ag1230 1696 SMART gyf_5 1166 1221 IPR003169 GO:0005515(InterPro)
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1605 1650 - -
Cone8ag1230 1696 MobiDBLite consensus disorder prediction 1261 1329 - -
Cone8ag1230 1696 SMART swib_2 705 776 IPR019835 -
Cone8ag1230 1696 CDD PHD5_NSD 475 520 - -
Cone8ag1230 1696 FunFam Zinc finger CCCH domain-containing protein 19 683 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1230 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0500 Cone-Chr14:2455388 Cone8ag1230 Cone-Chr8:10370478 1.72E-50 transposed
Cone12ag1185 Cone-Chr12:9349563 Cone8ag1230 Cone-Chr8:10370478 0 wgd
Cone6ag1664 Cone-Chr6:12672959 Cone8ag1230 Cone-Chr8:10370478 3.92E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46717 PF00505 HMG_box 1.40E-22 CL0114 Cone TR