Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1235 ATGCGAACGCTTTGCGACGTCTGCGAGAGCGCCGCAGCTATACTATTCTGCGCCGCCGACGAGGCCGCTCTCTGCCGTGCGTGCGACGAAAAGGTCCATACGTGTAATAAACTTGCTAACAGACATGTAAGAGTTGGGCTTGCTGACCCAAGTGATGTCCCAAGTTGTGATATATGTGAGAATTCACCTGATGGTAGTTCCCTTTGCCTGCAATGCGATATGATGGGTCATGTTGGTGGTAAAAGAACCCACGCGAGATACCTCCTATTGAGGCAAAGAGTTGAGGGGAGAAACATAGCAGTTTGGTGGATCCAATGCAACAACCACAGAATGCAAATGAAATGGAAAGGGATAATAATCAGACACCTAAGCTCTCAATAA 381 48.03 MRTLCDVCESAAAILFCAADEAALCRACDEKVHTCNKLANRHVRVGLADPSDVPSCDICENSPDGSSLCLQCDMMGHVGGKRTHARYLLLRQRVEGRNIAVWWIQCNNHRMQMKWKGIIIRHLSSQ 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10391492 10393090 - Conep08aG0127300.1 Cone8ag1235 443784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1235 126 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 95 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone8ag1235 126 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cone8ag1235 126 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone8ag1235 126 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cone8ag1235 126 SMART bboxneu5 51 89 IPR000315 GO:0008270(InterPro)
Cone8ag1235 126 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1352 Cone-Chr3:32522503 Cone8ag1235 Cone-Chr8:10391492 9.74E-09 transposed
Cone6ag1668 Cone-Chr6:12689471 Cone8ag1235 Cone-Chr8:10391492 1.82E-54 wgd
Cone8ag1235 Cone-Chr8:10391492 Cone9ag1590 Cone-Chr9:11408047 1.24E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46718 PF14309 DUF4378 4.50E-29 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1235 - - - 0.0