Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1240 ATGCCGGCTTTAGATTTCTGCGTGGATGCTGCCACTGCTCCTCCTGGCTACGCCTTTGCCAGGAATAGCTCTCATCTGTCGCCGGTCCCATTTTTCGGCGTACCTACGGTGACAACCAATACCACCATTAACGGCGTCGAGAACTCCCACTGGGCTCCATCTCTCTCCTCCGCCCTGTACAAGATAGACGGTTGGGGTGTACCCTACTTCTCCGTCAATGCCAATGGCAACATCACCGTCCGTTCATACGGAACGGAAACGTTACCTCACCAGGAGATTGATTTGCTCAAGATTGTGAAGAAGGTTCAAGATCCGAAATCATCTGGTGGTCTTGGATTGCAGCTTCCTCTCGTCGTACGTTTTCCTGATATCCTCAAAAACCGTCTCGAGTCTCTTCAATCCGCCTTCGATCTCGCTATCCATTCCCAAGGCTACCGTGCTCACTACCAGGGCGTTTACCCAGTCAAATGCAATCAGGACCGGTTCATTGTGGAGGACATCGTCAAATTCGGATCTCCATTCCGGTTCGGCCTGGAAGCTGGATCGAAACCAGAACTCCTGCTCGCAACGAGCTGCTTGTGCAAGGGGAACCCAGAAGCTCTTCTGGTCTGCAATGGATTTAAAGATGCCGAGTACATTTCTTTGGCTTTGATTGCCAGGAAGCTCGCATTGAATACAGTGATCGTGCTTGAACTAGAAGAAGAGCTAGATTTGGTCATCCGTTTGAGCCAGAAGCTATCTGTTCGTCCTGTTATTGGCATGCGGGCCAAGCTGAGGACAAAGCATTCGGGCCATTTCGGTGCAACTTCGGGCGAGAAAGGAAAATTCGGGCTCACTACAACCCAGATTATTCGTGTAGTGAGGAAACTTGAACAAGCCGGAATGCTTGATTGTCTCCAATTGCTCCATTTCCATATCGGGTCTCAGGTCCCTACAACTACCCTTCTTGCTGATGGTGTTTCTGAGGCTGCTCAGATCTATTGCGAACTGGTCCGCCTTGGTGCTTGTATGCAAGTGATAGACATTGGAGGTGGTTTAGGTATTGATTATGATGGGTCCAAATCCTGTGATTCAGAAATTTCAGTTGCTTATGGGCTCGAAGAATATGCCTTGGCAGTTGTTCAAGCGGTCCGTTGTGTCTGTGACAGTAGGTCCGTCAAGCACCCATTAATTTGCAGTGAAAGCGGCCGAGCCATTGTTTCTCATCACTCGGTCCTGATCTTTGAGGCCATTTCGGCTAGTTCGCGCGAGGCTCCTGCTCTGACCTCCCTTGGGCTCCACTATTTTGCAGAGGGACTTGCAGAGGATGTGTCTGCGGATTGCTACAGGAAGCTATCTGATGCGGCTTACGGAGGTGATTATGAAACTTGTTTGTTTTATGCTGATCAATTGAAAAACCGATCCGTTGAACAATTCAGAGAAGGGTCTTTGAATATTGAACAATTAGCTGCTGTTGATGGGCTTTGTGCTCTTGTTTCCAATGCAATCGGAGCTCCTGATCCTGTGCACACTTACCATGTGAACCTCTCTGTATTCACTTCAATCCCGGATTTCTGGGGAATAGGTCAGCTTTTTCCAATAGTTCCTATTCATCGTCTTGATCAACGTCCTATGATGAGAGGGATTCTCTCTGATTTAACATGTGATAGTGATGGGAAGATCGATAAGTTCATAGGTGGTGAGATGAGTCTCCCTCTACATGAAATGGAGGGCAAGAATGGAATTTCCAGTGGCGGAGGACGGAGGTACTATCTGGGTATGTTCTTGGGTGGGGCATACGAGGAGGCTCTTGGAGGGGTCCATAACCTATTTGGGGGCCCAAGCGTAGTTAGCATCTTGCAGAGCGACGGGCCATATAGCTTTGCGGTGACACGGGCAGTCCCAGGCCCCTCTTCTGGGGATGTCCTCCGAGGGATGCAGTTTGAGCCCGAGCTTATGTTCGAGACGCTCAAGCATCGAGCAGAGGAGTGCTATGGACAGGATGACGATGATTATGCTGCGTTGGCTAGTAGCCTTGCTCGGTCCTTCCATAACATGCCTTATCTTGTCCCAGAGACTTGTTGCTGCCCGACTGCAATGAATAATGATAACGGATTCCATTATTGTAGTGAGGATGAGTTCAATGCTGCTGTTGATTCTCCTTTTGCCGTTCTCGAGTGTGGTTCGAGCGATTGA 2175 49.29 MPALDFCVDAATAPPGYAFARNSSHLSPVPFFGVPTVTTNTTINGVENSHWAPSLSSALYKIDGWGVPYFSVNANGNITVRSYGTETLPHQEIDLLKIVKKVQDPKSSGGLGLQLPLVVRFPDILKNRLESLQSAFDLAIHSQGYRAHYQGVYPVKCNQDRFIVEDIVKFGSPFRFGLEAGSKPELLLATSCLCKGNPEALLVCNGFKDAEYISLALIARKLALNTVIVLELEEELDLVIRLSQKLSVRPVIGMRAKLRTKHSGHFGATSGEKGKFGLTTTQIIRVVRKLEQAGMLDCLQLLHFHIGSQVPTTTLLADGVSEAAQIYCELVRLGACMQVIDIGGGLGIDYDGSKSCDSEISVAYGLEEYALAVVQAVRCVCDSRSVKHPLICSESGRAIVSHHSVLIFEAISASSREAPALTSLGLHYFAEGLAEDVSADCYRKLSDAAYGGDYETCLFYADQLKNRSVEQFREGSLNIEQLAAVDGLCALVSNAIGAPDPVHTYHVNLSVFTSIPDFWGIGQLFPIVPIHRLDQRPMMRGILSDLTCDSDGKIDKFIGGEMSLPLHEMEGKNGISSGGGRRYYLGMFLGGAYEEALGGVHNLFGGPSVVSILQSDGPYSFAVTRAVPGPSSGDVLRGMQFEPELMFETLKHRAEECYGQDDDDYAALASSLARSFHNMPYLVPETCCCPTAMNNDNGFHYCSEDEFNAAVDSPFAVLECGSSD 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10406820 10409798 - Conep08aG0127800.1 Cone8ag1240 443789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1240 724 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 153 171 IPR022653 -
Cone8ag1240 724 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 60 613 IPR009006 GO:0003824(InterPro)
Cone8ag1240 724 CDD PLPDE_III_ADC 112 612 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 SUPERFAMILY PLP-binding barrel 121 403 IPR029066 -
Cone8ag1240 724 Gene3D Alanine racemase 122 403 IPR029066 -
Cone8ag1240 724 Gene3D - 420 501 - -
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 381 398 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 145 159 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 229 250 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 203 218 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 253 275 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 591 612 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 121 136 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 508 529 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PRINTS Arginine decarboxylase signature 533 558 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 148 401 IPR022644 GO:0003824(InterPro)
Cone8ag1240 724 FunFam Biosynthetic arginine decarboxylase 122 403 - -
Cone8ag1240 724 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 189 IPR000183 GO:0003824(InterPro)
Cone8ag1240 724 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 591 604 IPR000183 GO:0003824(InterPro)
Cone8ag1240 724 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 296 309 IPR000183 GO:0003824(InterPro)
Cone8ag1240 724 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 153 171 IPR000183 GO:0003824(InterPro)
Cone8ag1240 724 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 391 410 IPR000183 GO:0003824(InterPro)
Cone8ag1240 724 PIRSF ARGDC 36 684 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 NCBIfam arginine decarboxylase 51 682 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Cone8ag1240 724 PANTHER ARGININE DECARBOXYLASE 1 685 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)|GO:0008792(PANTHER)
Cone8ag1240 724 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 334 347 IPR022657 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1240 K01583 - - vvi:100233080 1069.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1192 Cone-Chr12:9387845 Cone8ag1240 Cone-Chr8:10406820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43