Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1241 ATGTCTGCAGCCTTCAGCGGCGATGAAACGGCACCGTTCTTCGGATTCCTTGGCGCCGCGGCGGCCCTTGTCTTCTCCTGTATGGGAGCTGCCTATGGAACAGCAAAGAGTGGGGTGGGAGTAGCATCAATGGGTGTGATGAGGCCCGAGCTGGTGATGAAGTCCATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTAATTATTGCTGTTATTATCAGTACCGGGATTAATCCCAAGGCTAAATCATACTACCTATTTGATGGATATGCTCATCTCTCATCTGGTCTTGCTTGTGGCCTTGCCGGCTTGTCTGCTGGAATGGCAATTGGTATTGTTGGTGATGCTGGTGTTAGGTTAGTGCCGATCTAG 381 49.87 MSAAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRLVPI 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10414340 10416112 - Conep08aG0127900.1 Cone8ag1241 443790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1241 126 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone8ag1241 126 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 122 - GO:0016021(PANTHER)
Cone8ag1241 126 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone8ag1241 126 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone8ag1241 126 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone8ag1241 126 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 126 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone8ag1241 126 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cone8ag1241 126 SUPERFAMILY F1F0 ATP synthase subunit C 87 122 IPR035921 -
Cone8ag1241 126 FunFam V-type proton ATPase proteolipid subunit 11 126 - -
Cone8ag1241 126 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cone8ag1241 126 Gene3D - 11 125 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1193 Cone-Chr12:9395083 Cone8ag1241 Cone-Chr8:10414340 9.26E-68 wgd
Cone17ag1386 Cone-Chr17:9600297 Cone8ag1241 Cone-Chr8:10414340 1.71E-65 wgd
Cone20ag0095 Cone-Chr20:434877 Cone8ag1241 Cone-Chr8:10414340 5.98E-66 wgd
Cone8ag0837 Cone-Chr8:8391216 Cone8ag1241 Cone-Chr8:10414340 9.91E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1241 K02155 - csv:101213721 215.698