Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1245 ATGGGGGAAACTGAGGAAGCTAATGTGATGCGAAACCTTCAATGTTCATTTGGAAATTCTTCCTCTTCATTTCTTAAGCAACCTTTATCTATGGACCAACTCAATCTTCACTCCTCACACATCCGTTCCCGCCAGTTTCCTCAAAATTTCTCTACAGATATTACGAAGAGAGTAGGTATTCCACCTTCACACCCACACCAGATCCCTCCCATTTCACCCTATTCTCAGATCCCAGCCCCACGTCCAGCAAATCAGCAATCAAATTCACAGAATTTTGGTCCAGGACCTTGCCATAATCGATCCTTATCACAGCCTGCATTTTTCTCATTAGATTCATTGCCCCCGTTAAGCCCGGCACCATTTAGAGACTCCACATCTTCATCCGTTTCAGACCAGGTTTCAGCCGATGCATCAATGGAGGATAGGGATGTAAATTCACATTCTTTGTTGCCACCCTCGCCTTATACGAGGGGTAATTCTTTCAAGGTTGGAGAGAGCTTACCCCCTCGAAAAGCTCATAGGCGGTCTAATAGTGATATCCCATTTGGATTCTCTACTGTGATGCAATCTTCCCCTCCCCTTATTCCATCAAAAGGTTCCGGTAAAGTCAGTTTTGGGATGGCAAAGTTGGCCCAGCCCCAGTTGGTCAAAAGAGAATCTATTTGGGAGAGAGATGGTAACAGTGTGGAAGGGATGGGTGAGAGGAAATCCGAAGGGGATGTAGTGGATGATCTGTTTTCTGCTTATATGAACGTTGATAATATTGATTCGTTCAACTTTTCTGGGACAGATGACAAGAATGGTAATGAGAATCGGGAGGATTTGGATAGTAGAGCAAGTGGAACAAAGACGAATGGAGGAGGTGATAATAGTGAAAATGAAGCAGAAAGTAGTGTTAATGAATGTGGTGGAAATATGCAGAGAATGGGATTGAGTTCTTCTAATGAGAAAAGGGAAGGGGTTAAAAGGAGTGCTGGAGGTGATATTGCTCCTACCACTAGGCATTATAGAAGTCTTTCCATGGATAGTTTTATGGGCAAACTGCAGTTTGCTGATGAGTCTCCTAAAATGCCGCCTTCTCCGGGTGCTCAGCTGGGCCAGCTTTCTCCGAACAATTTGGTTGATGGTAATTCAGGAGCTCCTTTTAGCTTGGAGTTTGGAAATGGCGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCCAATGATAAACTTGCAGAAATTGCATTGACTGATCCCAAGCGTGCAAAAAGGATACTGGCAAATCGCCAATCAGCTGCTAGATCAAAAGAAAGGAAGATGCGGTATATTTCGGAGTTGGAGCACAAGGTGCAGACTCTTCAGACAGAAGCTACTACTCTTTCTGCACAGCTTACTCTTCTACAGAGAGATTCAGTTGGGCTGACAAACCAGAATAATGAGCTGAAGTTTCGTCTTCAAGCCATGGAACAACAAGCTCAACTGCGAGACGCTCTAAATGAAGCCCTAACTGCGGAGGTGCAACGATTGAAGCTTGCTACTTCAGAACCAAGCGGGCACAAGTCTCTTTCTTCAAATAACCACAACATGTTTCAGCAGAACAACGGCAACTATACGACCAAACCCGAGTCCAATCAATAG 1620 44.44 MGETEEANVMRNLQCSFGNSSSSFLKQPLSMDQLNLHSSHIRSRQFPQNFSTDITKRVGIPPSHPHQIPPISPYSQIPAPRPANQQSNSQNFGPGPCHNRSLSQPAFFSLDSLPPLSPAPFRDSTSSSVSDQVSADASMEDRDVNSHSLLPPSPYTRGNSFKVGESLPPRKAHRRSNSDIPFGFSTVMQSSPPLIPSKGSGKVSFGMAKLAQPQLVKRESIWERDGNSVEGMGERKSEGDVVDDLFSAYMNVDNIDSFNFSGTDDKNGNENREDLDSRASGTKTNGGGDNSENEAESSVNECGGNMQRMGLSSSNEKREGVKRSAGGDIAPTTRHYRSLSMDSFMGKLQFADESPKMPPSPGAQLGQLSPNNLVDGNSGAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATSEPSGHKSLSSNNHNMFQQNNGNYTTKPESNQ 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10426305 10429297 + Conep08aG0128300.1 Cone8ag1245 443794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1245 539 Pfam bZIP transcription factor 414 468 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1245 539 MobiDBLite consensus disorder prediction 258 332 - -
Cone8ag1245 539 MobiDBLite consensus disorder prediction 179 197 - -
Cone8ag1245 539 MobiDBLite consensus disorder prediction 63 77 - -
Cone8ag1245 539 Coils Coil 430 485 - -
Cone8ag1245 539 MobiDBLite consensus disorder prediction 506 539 - -
Cone8ag1245 539 SMART brlzneu 410 474 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1245 539 FunFam probable transcription factor PosF21 413 466 - -
Cone8ag1245 539 Gene3D - 413 465 - -
Cone8ag1245 539 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 412 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1245 539 MobiDBLite consensus disorder prediction 508 539 - -
Cone8ag1245 539 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 154 528 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone8ag1245 539 MobiDBLite consensus disorder prediction 78 100 - -
Cone8ag1245 539 MobiDBLite consensus disorder prediction 43 100 - -
Cone8ag1245 539 MobiDBLite consensus disorder prediction 280 314 - -
Cone8ag1245 539 CDD bZIP_plant_RF2 415 464 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1245 539 MobiDBLite consensus disorder prediction 118 200 - -
Cone8ag1245 539 SUPERFAMILY Leucine zipper domain 414 465 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1245 539 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0141 Cone-Chr5:607378 Cone8ag1245 Cone-Chr8:10426305 8.78E-43 dispersed
Cone5ag1039 Cone-Chr5:4543506 Cone8ag1245 Cone-Chr8:10426305 3.89E-24 dispersed
Cone8ag1245 Cone-Chr8:10426305 Cone9ag0205 Cone-Chr9:871968 3.82E-09 dispersed
Cone12ag1197 Cone-Chr12:9407322 Cone8ag1245 Cone-Chr8:10426305 0 wgd
Cone17ag1388 Cone-Chr17:9607920 Cone8ag1245 Cone-Chr8:10426305 2.80E-160 wgd
Cone20ag0093 Cone-Chr20:425791 Cone8ag1245 Cone-Chr8:10426305 3.08E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46720 PF00773 RNB 4.80E-92 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1245 - - - 0.0