Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1258 ATGAGTATGGATCCTCACGATGACAAACCAGCTGTATTGGAGGAAGCCATCGTTCTAGAAGCTGAGAAGCGCCCCATTTCCTCCATCCTCATCATCATCGCTATGCAAACCGAAGCGCTTCCTGTTGTGAACAAGTTCCAGCTCACTGAAGACCCTAACTCCGCGTTTCCAAAAGGGACCCCTTGGGTCCGATATCAAGGAACCTACAAAGATCTTCAAATCAATTTAGTTTGGTCGGGAAAAGATTTGACGTTAGGAGTTGATAATGTAGGCACTCTATCAGCTTCCCTTGTAACATATGCTTCTATCCAAGCGTTTCAACCCGACCTGATCATAAATGCAGGGACTGCTGGTGCCTTCAAGGTCAAAGGTGCTGGCATTGGAGATGTGTATGTCGTGTCTGATTGTGCTTTCCATGACAGAAGAATACCTATACCTGTTTTTGATTTGTATGGGGTTGGTTTACGGCAAGCACTATCTACACCTAATCTTATCAAGGAACTTAACCTAAAGATCGGCAAGTTGTCTACTGGCGACTCGCTTGATATGTCCCCACATGATGAAGGATCAATTATAGCAAATGATGCAACACTCAAAGACATGGAGGGAGCAGCTGTGGCCTATGTGGCCGATCTTTTCAAAGTTCCTGTGATATTCATAAAAGCCGTGACAGATATAGTAGACGGTGAAAAACCCCCAGCTGAGGAATTCTTACAGAATCTGGCTACAGTGACTGCTGCTCTGGATCAAGCTGTCACCCAAGTTATTGATTTTATCAATGGAAAGTCCATTTCCGAACTTTGA 804 44.53 MSMDPHDDKPAVLEEAIVLEAEKRPISSILIIIAMQTEALPVVNKFQLTEDPNSAFPKGTPWVRYQGTYKDLQINLVWSGKDLTLGVDNVGTLSASLVTYASIQAFQPDLIINAGTAGAFKVKGAGIGDVYVVSDCAFHDRRIPIPVFDLYGVGLRQALSTPNLIKELNLKIGKLSTGDSLDMSPHDEGSIIANDATLKDMEGAAVAYVADLFKVPVIFIKAVTDIVDGEKPPAEEFLQNLATVTAALDQAVTQVIDFINGKSISEL 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10469660 10472073 + Conep08aG0129600.1 Cone8ag1258 443807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1258 267 PANTHER 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE 1 20 267 IPR044580 GO:0008930(InterPro)|GO:0019509(InterPro)
Cone8ag1258 267 Gene3D Nucleoside phosphorylase domain 23 267 IPR035994 GO:0003824(InterPro)|GO:0009116(InterPro)
Cone8ag1258 267 CDD MTAN 29 248 - -
Cone8ag1258 267 Pfam Phosphorylase superfamily 29 256 IPR000845 GO:0003824(InterPro)|GO:0009116(InterPro)
Cone8ag1258 267 SUPERFAMILY Purine and uridine phosphorylases 5 256 IPR035994 GO:0003824(InterPro)|GO:0009116(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1258 K01244 - - mdm:114827619 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1206 Cone-Chr12:9442239 Cone8ag1258 Cone-Chr8:10469660 1.16E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012224 2 1 1 1 0 1 2 1 1 1 0 1 2 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 29