Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1261 ATGTCAGTAAACACAGGCGACCCAATTCAGAATGGGAACATGAAAAGCATAGAAATGGCGATAGATGAAGATTGTGACATCTCAAGGCTGTTAGAGAAGCCTAGGCTATTAAATATAGACAGACAGAGATCCTGTGATGAGCTCTCAATTGGGTTATCTCCATATCAGTCCACCTCTCGAAATGACAATTTTTCCCGAACCATGGACTCTCTTGACTACATCTATTCCCCATCACCCAGAAGAAGGTCTGGTTTTAACACTCCAGCGTCCGAAAACGGGTTTGAACCACATCCCATAGTGGCTGAGGCTTGGGAATCCTTGAGGCGGTCTTTGGTTCATTTCCGTGGCCAACCTGTTGGAACCATTGCTGCCTTAGACTTCTCTTCCGAAGAAAAGCTTAACTATGATCAGGTATTTGTAAGAGATTTTGTGCCAAGTGCATTGGCGTTTCTGATGAACGGGGAGCCGGAAATAGTGAAGAACTTTATACTAAAGACGCTACGCCTTCAATCATGGGAGAAAAAGATAGATCGGTTTCAGCTCGGAGAAGGAGTGATGCCTGCTAGTTTCAAAGTACTCCATGATCCGGTCAGAAACACTGAGACCTTAATGGCTGATTTTGGAGAGAGTGCAATTGGTAGAGTGGCCCCTGTTGATTCTGGATTTTGGTGGATCATATTACTCCGTGCTTACACAAAGTCAACAGGTGACCCTTCCTTAGCAGAACGTCCGGAATGCCAGAAGGGCATGCACCTTATACTTAGTCTATGCCTTTCTGAAGGGTTCGACACTTTCCCTACCCTTCTCTGTGCTGATGGGTGCTGCATGATTGATCGTAGAATGGGTGTTTATGGATATCCGATTGAGATTCAGGCGCTATTCTTCATGGCATTAAGGTGTGCTATGGTGTTGCTCAAGCAAGACGATGAAGGAAAGGAGTTTGTGGAAAGGATAGTTAAAAGGCTCCATGCTTTAAGTTATCACATGAGAAGCTACTTCTGGCTAGACTTGAAGCATCTTAACGACATATACCGGTATAAAACAGAGGAATATTCTCACACTGCGGTAAACAAGTTTAATGTTATTCCAGATTCTCTTCCCGAATGGGTTTTCGACTTCATGCCGACTAGAGGTGGTTACTTTATCGGGAATGTTAGTCCGGCAAGAATGGATTTCCGTTGGTTTTGTTTAGGTAATTGCATTGCGATTCTTTCTTCCTTGGCTACTCCGGAACAATCTACGGCTATTATGGACCTTATTGAATCGAGATGGGAGGAGTTAGTCGGAGAAATGCCGCTTAAAGTTTGTTATCCCGCCATAGAAAGCCATGAATGGAGGATCGAAACTGGATGTGACCCCAAAAATACCCGATGGAGTTACCACAATGGAGGTTCTTGGCCAGTGCTTTTATGGCTTCTAACAGGGGCTAGTATCAAGACGGGACGGCCTCAAACTGCAAGACGAGCTATAGAACAAGCGGAGAGCAGGTTGCAGAAAGACAACTGGCCGGAATATTATGACGGGAAATCGGGACGGTTTGTTGGGAAACAGGCAAGGAAGTTACAGACATGGTCAATTGCTGGGTATTTGGTTGCAAAGATGATGTTGGAAGATCCGTCTCATCTCGGTATGATCTCGCTCGAGGAAGACAAGCAGATGAAGCCCGTAATGAGACGATCCAATTCATGGACTTCTTAA 1698 44.94 MSVNTGDPIQNGNMKSIEMAIDEDCDISRLLEKPRLLNIDRQRSCDELSIGLSPYQSTSRNDNFSRTMDSLDYIYSPSPRRRSGFNTPASENGFEPHPIVAEAWESLRRSLVHFRGQPVGTIAALDFSSEEKLNYDQVFVRDFVPSALAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNTETLMADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDPSLAERPECQKGMHLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCAMVLLKQDDEGKEFVERIVKRLHALSYHMRSYFWLDLKHLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIETGCDPKNTRWSYHNGGSWPVLLWLLTGASIKTGRPQTARRAIEQAESRLQKDNWPEYYDGKSGRFVGKQARKLQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVMRRSNSWTS 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10477023 10479543 - Conep08aG0129900.1 Cone8ag1261 443810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1261 565 Gene3D - 122 534 IPR012341 GO:0005975(InterPro)
Cone8ag1261 565 PANTHER - 78 557 IPR024746 GO:0004575(PANTHER)|GO:0005987(PANTHER)|GO:0033926(InterPro)
Cone8ag1261 565 FunFam probable alkaline/neutral invertase B 129 532 - -
Cone8ag1261 565 Pfam Alkaline and neutral invertase 103 539 IPR024746 GO:0033926(InterPro)
Cone8ag1261 565 SUPERFAMILY Six-hairpin glycosidases 114 532 IPR008928 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0743 Cone-Chr17:5530280 Cone8ag1261 Cone-Chr8:10477023 0 dispersed
Cone20ag0699 Cone-Chr20:4388681 Cone8ag1261 Cone-Chr8:10477023 0 dispersed
Cone7ag0090 Cone-Chr7:397378 Cone8ag1261 Cone-Chr8:10477023 4.32E-207 dispersed
Cone12ag1209 Cone-Chr12:9449436 Cone8ag1261 Cone-Chr8:10477023 0 wgd
Cone17ag1403 Cone-Chr17:9666695 Cone8ag1261 Cone-Chr8:10477023 1.65e-317 wgd
Cone20ag0079 Cone-Chr20:372500 Cone8ag1261 Cone-Chr8:10477023 2.03E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73