Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1264 ATGGAGTATCGTTTCCGACAAATGGACGGTTACATTCAAGCGGCGTCAAATTCAATTCCACAGCTCGAAGAATTTTCTCAGCTCCAAAGTTGTTCTCAACCTAATTCCAGCCAAGTGCCTGAAGGAGAGCAGCCTAAGGATTCAATGGCTGCTAGAAAAATTCAGAAAGCCGATAGAGAGAAACTAAGGAGAGACCGATTAAACGAGCACTTTGTTGAGCTGGGAAATGTATTAGATCCTGACAGGCCGAAAAATGACAAGGCAACCATTCTGACCGATACAATCCAATTGCTCAAGGACTTAACAGCCCAAGTTAACAAACTGAAAACCGAGTATGCCACATTAACAGAAGAATCCCGTGAGTTGACACAGGAGAAAAATGACCTTAGAGAAGAGAAGGCATCTATAAAATCCGATATAGAGAATCTTAACACGCAATATCAAGAAAGACTCAGGGCAGTGTATCCATGGGGTGCCATGAACCACTCTGTAGTGATGGGTCCACCCTCTTACCCATTTCCTATGCCGATACATATGCCTCCGGGCCCAATTGCGATGCATCCATCCATTCAACCTTACCCGTTCTTCGGAAATCAAAATCCTGGTGCCATTACTAATCCATGCTCCACATTTGTTCCGTATATACACCCTAATACCTTAGTTGAGCAACAGTCTGCCCCACAACATGTACCTCAATTTGTGCATCTGGGAAGTCAGTCTCACAACTCGGTGAAACAAGATTCCAAGAACAAGGCGGAAAAAACTGAGGATTCTAATGAAGTGACAACTGACTTGGAGTTGAAGACTCCTGGCTCTACAACAGATCAGGATTTGTCATCGGGTCGAAGAAAATGTAAGGGGGCGAAGAGGAAGGAAAGCTGTTTTACAGAAGGGAGTTCTTCAAGTAGATGCTCTTCAGCTCATAGCATACAGGATAGCTCATCTAACAGTATAGTTGATGATGGCAGAAAGTCCAATGAAGGACATGAGGCTACAGAAAAGTAG 1005 43.88 MEYRFRQMDGYIQAASNSIPQLEEFSQLQSCSQPNSSQVPEGEQPKDSMAARKIQKADREKLRRDRLNEHFVELGNVLDPDRPKNDKATILTDTIQLLKDLTAQVNKLKTEYATLTEESRELTQEKNDLREEKASIKSDIENLNTQYQERLRAVYPWGAMNHSVVMGPPSYPFPMPIHMPPGPIAMHPSIQPYPFFGNQNPGAITNPCSTFVPYIHPNTLVEQQSAPQHVPQFVHLGSQSHNSVKQDSKNKAEKTEDSNEVTTDLELKTPGSTTDQDLSSGRRKCKGAKRKESCFTEGSSSSRCSSAHSIQDSSSNSIVDDGRKSNEGHEATEK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10483506 10485355 - Conep08aG0130200.1 Cone8ag1264 443813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1264 334 Coils Coil 91 146 - -
Cone8ag1264 334 CDD bHLH_AtILR3_like 56 130 - -
Cone8ag1264 334 MobiDBLite consensus disorder prediction 294 321 - -
Cone8ag1264 334 MobiDBLite consensus disorder prediction 238 334 - -
Cone8ag1264 334 Gene3D - 49 134 IPR036638 GO:0046983(InterPro)
Cone8ag1264 334 MobiDBLite consensus disorder prediction 264 278 - -
Cone8ag1264 334 MobiDBLite consensus disorder prediction 25 50 - -
Cone8ag1264 334 SMART finulus 57 107 IPR011598 GO:0046983(InterPro)
Cone8ag1264 334 Pfam Helix-loop-helix DNA-binding domain 52 102 IPR011598 GO:0046983(InterPro)
Cone8ag1264 334 MobiDBLite consensus disorder prediction 25 43 - -
Cone8ag1264 334 MobiDBLite consensus disorder prediction 246 263 - -
Cone8ag1264 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 120 IPR036638 GO:0046983(InterPro)
Cone8ag1264 334 PANTHER TRANSCRIPTION FACTOR BHLH121 25 325 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cone8ag1264 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0715 Cone-Chr12:6609367 Cone8ag1264 Cone-Chr8:10483506 2.75E-68 dispersed
Cone13ag0077 Cone-Chr13:471625 Cone8ag1264 Cone-Chr8:10483506 1.37E-09 dispersed
Cone8ag1264 Cone-Chr8:10483506 Cone8ag1455 Cone-Chr8:11228658 9.00E-10 dispersed
Cone12ag1212 Cone-Chr12:9455206 Cone8ag1264 Cone-Chr8:10483506 3.83E-141 wgd
Cone8ag0851 Cone-Chr8:8463240 Cone8ag1264 Cone-Chr8:10483506 7.08E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46721 PF00069 Pkinase 4.20E-48 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1264 - - - 0.0