Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1272 ATGGAAGCAACAGTCGAGGGTATTCAACGAGGATTTGCTGAGAATATGTTCACATCAAGAGAGCTAGTGGAGTACTACTTGGACCAGATCAAGACCTTGAACCCTCTGCTTCGCAGCGTAGTGGAGGTCAATCCAGACGCCAGGGATCAAGCGGACGAGGCTGACCGGCAGAGGCAGAACATACAAGACGTTCTTCCTCTGTTCTCGTTGTTGCTCGGTATCCTTTCCCTAACCATATTCCCATATGGCTGTCAAGCTATCATGGGCAATGGCTTCAAAATTGAAGAAGCCACCATAAAAGATCTGCATTTAGCTTTCGAGCAAAATCAACTCACCTCTAGACTACTGATCGAATTTTACATCAAAAGAATCCACAAGTTCAACCACATCCTCAACGCCATCATAGAGTTGAACCCCGATGCTTTATCTCTTGCAGATAAGGCCGATCAAGAGCTCAAAGATAGAACACAAGGGTCGATATTGCCTAGATTGCATGGAATTCCTATTCTGCTCAAGGATAACATTGCAACCAAGGATAAGTTAAACACAACAGCTGGCTCGTTCGCTTTACTTGGCTCTGTTGTCTCTTATGAAGCAACTGTTGTTACCAAGTTAAGGAATGCAGGGGCTATCATATTGGGTAAAGCTAACATGGCCGAGTGGGCTGCTCTTAGGTCATCTTCTATGCCGACTGGTTGGAGCGCTAGAGGTGGTTATGGAAAGAATCCGTATAATTTGGCGGAACAACCTGGAGGATCAAGTAGCGGATCTGCAATATCAGTTGCAACAAATATGGTAGCAGTTTCACTAGGGACTGATTCAAGCGGATCTATTTTATATCCGGCAGCTTTAAATTCAGTGGTAGGAATAAGACCAACTTTTGGACTGATTAGTCGGACCGGAATTATCCCATACTTGAGTAGATATGATACTATTGGACCAATGAGTAGAACTGTATCAGATGCTGTTTATGTTCTCGATTCTATTATAGGGATCGACCATCATGACAGCGCCACCCGTGAAGCATCACAGTATATTTCAAAGGATAGTTATGTAAAATTTCTCAAAATTGATGGACTCAAAGGGAAGAGATTGGGTATAACTAGATCAGAGACATTATTCCGTACAAGTGATCCTATGTTGGACCAAACCTTGAAGGAACATGCCCAAACATTTAGGGAACAAGGGGCGGTTTTGATAGACCATCTAAACATTCCCAACCTTGAACGTCACTTCCATGCAAAGGCCACTGCCTTGGATGCAATATTCAGTTCGATGAAGAGCTCATTGAATGGATACCTAAAACAGCTTTTGATTTCTCCCGTACGATCTTTGAAAGATGTCATAAAGTTCAATAACGAGAATCCCGGATTGGAATCAACCATGGTTTATGAGCAAGATCTATTCCTTCGTATTGAGCTAGCAAGAGGAGTAGGAATTAGGGAACATATGCTATTGACAGAAGTTGAAAATCAAGCAACGGTGGGATTCGAGAAGGTGATGAAAGAGAAAAACCTCGATGCACTGATTTCACCTATCGTTTACGCTGCTAATGTTCTTCCATATGGAGGATTTCCCATCATTATGGTGCCTGCAGGATATTCACAAAACGGCGTGCCATTTGGTATTTGCTTTTCCGGACTAAAAGGCAGTGAGGCTACTTTGATTGAGATAGCATATGGGTTTGAGCAAGCAACAAAGATTAGGAAACCCCCTTCACTTGAAAATATATAG 1734 42.73 MEATVEGIQRGFAENMFTSRELVEYYLDQIKTLNPLLRSVVEVNPDARDQADEADRQRQNIQDVLPLFSLLLGILSLTIFPYGCQAIMGNGFKIEEATIKDLHLAFEQNQLTSRLLIEFYIKRIHKFNHILNAIIELNPDALSLADKADQELKDRTQGSILPRLHGIPILLKDNIATKDKLNTTAGSFALLGSVVSYEATVVTKLRNAGAIILGKANMAEWAALRSSSMPTGWSARGGYGKNPYNLAEQPGGSSSGSAISVATNMVAVSLGTDSSGSILYPAALNSVVGIRPTFGLISRTGIIPYLSRYDTIGPMSRTVSDAVYVLDSIIGIDHHDSATREASQYISKDSYVKFLKIDGLKGKRLGITRSETLFRTSDPMLDQTLKEHAQTFREQGAVLIDHLNIPNLERHFHAKATALDAIFSSMKSSLNGYLKQLLISPVRSLKDVIKFNNENPGLESTMVYEQDLFLRIELARGVGIREHMLLTEVENQATVGFEKVMKEKNLDALISPIVYAANVLPYGGFPIIMVPAGYSQNGVPFGICFSGLKGSEATLIEIAYGFEQATKIRKPPSLENI 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10508549 10510930 + Conep08aG0131000.1 Cone8ag1272 443821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1272 577 PANTHER AMIDASE 86 575 - -
Cone8ag1272 577 Gene3D Amidase signature (AS) domain 1 75 IPR036928 -
Cone8ag1272 577 Gene3D Amidase signature (AS) domain 84 574 IPR036928 -
Cone8ag1272 577 Pfam Amidase 116 555 IPR023631 -
Cone8ag1272 577 SUPERFAMILY Amidase signature (AS) enzymes 3 68 IPR036928 -
Cone8ag1272 577 SUPERFAMILY Amidase signature (AS) enzymes 93 572 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1272 K01426 - - vvi:100252118 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0277 Cone-Chr13:1958932 Cone8ag1272 Cone-Chr8:10508549 9.54E-29 dispersed
Cone8ag0194 Cone-Chr8:1012208 Cone8ag1272 Cone-Chr8:10508549 4.69E-174 dispersed
Cone8ag1270 Cone-Chr8:10504568 Cone8ag1272 Cone-Chr8:10508549 1.44E-151 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1219 Cone8ag1272 . . Lsi10g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01185 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117