Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1274 ATGCCCACTCTGCAAAACGCCATTTTCAATCCCACTAAACGCAAGAGAAGCCCTCCTGCTAAGCTCCCATGCGTGGTGCAATCCCTCCTCAACCTCATTTCTCAAGGTCTCCTTTCAGAAGCCCTCTCCAACCTTGATCTTTTAGTCCGCAGAGGAATACGTTTACCTTCTCGCACTCTAGCACACCTCTTACGACAGTGTGCGAATGCTAAGTATCTTACAGGAGGCAAATGGATTCACCTCCATTTGAAACTTACGGGATTCAAACATCCCACTACTTTTGTAGCCAACCATTTGATAAACATGTACTTTAAATGCTACGGAAGTGAAGTTGACGCACGCAAGGTGTTTAATAAAATGTCTGTGAGAAATGTGTACTCTTGGAATAATATGCTTTCTGGGTATGCTAAGCTGGGGAATATAAAGCAAGCTAAGAAGTTATTTGAGGAAATGCCTGAAAAGGACGTTGTGTCGTGGAATACAATGGTGATTGCCTATGCTCAGAAGGGTAGTGTTGAGGCTTTAAGGTTGTATAAAGCGTTTAGGATGCTTTCCATAGGACATAACGAGTTTAGTTTTGCTGGTGTATTAACTCTTTGTGTGAAATTGAAGGAACTCCATCTCACTAGGCAGGTCCATGGGCAGGTTTTAATTGTCGGGTTCTTGTCAAATGTGGTGCTTTCCAGTTCTATTGTTGATGCTTATGTTAAATGTGGGGTCATGGACAATGCAAGGAGATTGTTTGACAACATTTCGATAAGAGATATCCTTACTTGGACCACTATGGTTTCTGGGTATGCCAGATGGGGTGATATGAAATCAGCTTGTGAGTTATTTAATCAGATGCCTGAAAAGAATCCTGTTTCTTGGACAGCTTTGATATCAGGCTATGCAAGAAATTCTTTGGGACATGAAGCACTGGAGTTGTTCAAACAAATGCTGGAATTTCGAATTAGACCTGATCAATATACTTTCAGCAGCTGCCTTTGTGCTTGTGCCACAATATCCACACTTAAGCACGGTAAACAGATACACGCTTATTTGTTAAGATCTAATTTTAAACCCAACACAATAGTGGTTAGCTCTCTAATCGACATGTATTCTAAGTGTGGAAGTCTAGAAGCCAGTATGGAAGTTTTCTATTTAATGGGTAACAAACAAGATGGTGTGTTATGGAACACAGTGATATCTGCTTTAGCACAACATGGAAATGGTGAAGAAGCTATAAAGATGTTCAATGACATGGTTAGATCAGGACTTAAGCCAGATAGGGTCACTTTTGTTGTAATTCTAAGTGCTTGTAGTCATTCTGGTCTAGTTCAAAACGGGCTAAAGTTTTTCCAATCGATGAGGTTCGACCACGGCATTGTTCCTGACCAAGAACATTACGCTTGCTTGATTGACCTTCTGGGTCGAGCCGGACATTTCACGGAGTTGATAAAACAGCTCAAGAAGATGCCTTGTAAGCCTGATGATAAGATTTGGAATTCTTTACTAGGTGTTTGTAAAATGCATAGTAATATGGAGCTTGGAAGAGAAGCAGCTGAGCAATTGATGAAGATGGAGCCTGGATCCTCTGCAACCTATGTGCAGCTTGCAAGCATGTATGCTGAGGTTGGTAGGTGGGAATCTGTGGCGAAGGTTAGAAAGGTGATGAACGAGCGAGCTGTAATGAAAGAGCGTGCGATTAGTTTGATAGAGATTGAGAATAAGATGCATTCTTTCACTGTGTCTGATAGATTGCATCCATTGAAAGAAGAAATATACTTGCTTTTGGAACAGTTAACTGACCATATGGGAACACCCGATTTGTCTCCATTCTTGACCGAAAGGTAA 1836 41.29 MPTLQNAIFNPTKRKRSPPAKLPCVVQSLLNLISQGLLSEALSNLDLLVRRGIRLPSRTLAHLLRQCANAKYLTGGKWIHLHLKLTGFKHPTTFVANHLINMYFKCYGSEVDARKVFNKMSVRNVYSWNNMLSGYAKLGNIKQAKKLFEEMPEKDVVSWNTMVIAYAQKGSVEALRLYKAFRMLSIGHNEFSFAGVLTLCVKLKELHLTRQVHGQVLIVGFLSNVVLSSSIVDAYVKCGVMDNARRLFDNISIRDILTWTTMVSGYARWGDMKSACELFNQMPEKNPVSWTALISGYARNSLGHEALELFKQMLEFRIRPDQYTFSSCLCACATISTLKHGKQIHAYLLRSNFKPNTIVVSSLIDMYSKCGSLEASMEVFYLMGNKQDGVLWNTVISALAQHGNGEEAIKMFNDMVRSGLKPDRVTFVVILSACSHSGLVQNGLKFFQSMRFDHGIVPDQEHYACLIDLLGRAGHFTELIKQLKKMPCKPDDKIWNSLLGVCKMHSNMELGREAAEQLMKMEPGSSATYVQLASMYAEVGRWESVAKVRKVMNERAVMKERAISLIEIENKMHSFTVSDRLHPLKEEIYLLLEQLTDHMGTPDLSPFLTER 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10520468 10522596 + Conep08aG0131200.1 Cone8ag1274 443823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1274 611 Gene3D Tetratricopeptide repeat domain 27 175 IPR011990 GO:0005515(InterPro)
Cone8ag1274 611 FunFam Pentatricopeptide repeat-containing protein mitochondrial 340 450 - -
Cone8ag1274 611 Pfam PPR repeat 255 282 IPR002885 -
Cone8ag1274 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cone8ag1274 611 FunFam Pentatricopeptide repeat-containing protein At3g49710 65 204 - -
Cone8ag1274 611 FunFam Pentatricopeptide (PPR) repeat-containing protein 451 607 - -
Cone8ag1274 611 NCBIfam pentatricopeptide repeat 126 157 IPR002885 -
Cone8ag1274 611 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Cone8ag1274 611 NCBIfam pentatricopeptide repeat 258 285 IPR002885 -
Cone8ag1274 611 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Cone8ag1274 611 Gene3D Tetratricopeptide repeat domain 226 338 IPR011990 GO:0005515(InterPro)
Cone8ag1274 611 Gene3D Tetratricopeptide repeat domain 442 582 IPR011990 GO:0005515(InterPro)
Cone8ag1274 611 Gene3D Tetratricopeptide repeat domain 339 441 IPR011990 GO:0005515(InterPro)
Cone8ag1274 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cone8ag1274 611 Pfam E motif 505 567 IPR046848 -
Cone8ag1274 611 SUPERFAMILY TPR-like 120 547 IPR011990 GO:0005515(InterPro)
Cone8ag1274 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Cone8ag1274 611 FunFam Pentatricopeptide repeat-containing protein At3g49710 205 339 - -
Cone8ag1274 611 Pfam PPR repeat 126 155 IPR002885 -
Cone8ag1274 611 Pfam PPR repeat 157 173 IPR002885 -
Cone8ag1274 611 Pfam PPR repeat 360 384 IPR002885 -
Cone8ag1274 611 Pfam PPR repeat 229 249 IPR002885 -
Cone8ag1274 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Cone8ag1274 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 151 - -
Cone8ag1274 611 Pfam PPR repeat family 286 333 IPR002885 -
Cone8ag1274 611 Pfam PPR repeat family 390 435 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1274 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1274 Cone-Chr8:10520468 Cone5ag0673 Cone-Chr5:2880031 1.62E-91 dispersed
Cone12ag1222 Cone-Chr12:9503891 Cone8ag1274 Cone-Chr8:10520468 4.84E-247 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33