Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1275 ATGGGCGAGAGGGTGAGTGGGAAGGTGAAGTGGTTCAATGACACTAAGGGTTTCGGATTTATAACCCCTAACGATGAAAGCGACGATCTGTTCGTTCATCAGTCCTCGATCAGATCCGAAGGATTTCGCAGTCTAGCGGAAGGAGAAGATGTCGAGTTTAACATCGAATCGGACTCCAACGGTCGTGCTAAGGCTGTTGACGTAACCGGTCCGGGAGAGGCACCTGTGCAGGGTAGCCGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGAGGAAGAGGTGGCGGAAGACGAGGAGGCGGCAGTGGGTATGGGTTCAACGGAGGAGGACGTGGTGGTGGAGGAAGAGGAGGGTTCGGTGGAGGCGGTTACGGTGGAGGAGGCGGTTATGGAGGCGGCGGAGGCGGAGGTGGCGCTTGCTTTAAGTGTGGCGAGACAGGGCACATGGCTAGAGACTGCTATCAGGGCGGAAGCGGTGGAGGAGGCGGAGGTTACGGAGGTGCTGGTGGGGGCGGTGGCGGTGGGAACTGCTATAACTGCGGTGGATCTGGGCACTTTGCGAGAGAGTGTCCTGATAGAGGCCAGTGA 597 60.13 MGERVSGKVKWFNDTKGFGFITPNDESDDLFVHQSSIRSEGFRSLAEGEDVEFNIESDSNGRAKAVDVTGPGEAPVQGSRGGGGGGGGGGGGGGGRGGGRRGGGSGYGFNGGGRGGGGRGGFGGGGYGGGGGYGGGGGGGGACFKCGETGHMARDCYQGGSGGGGGGYGGAGGGGGGGNCYNCGGSGHFARECPDRGQ 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10525508 10527010 + Conep08aG0131300.1 Cone8ag1275 443824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1275 198 Pfam Zinc knuckle 142 156 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 Pfam Zinc knuckle 179 194 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 Gene3D - 2 81 IPR012340 -
Cone8ag1275 198 MobiDBLite consensus disorder prediction 55 106 - -
Cone8ag1275 198 CDD CSP_CDS 5 70 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 SMART c2hcfinal6 142 158 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 SMART c2hcfinal6 179 195 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 PANTHER COLD SHOCK DOMAIN PROTEIN 2 110 195 - -
Cone8ag1275 198 SMART csp_8 6 71 IPR011129 GO:0003676(InterPro)
Cone8ag1275 198 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Cone8ag1275 198 ProSiteProfiles Zinc finger CCHC-type profile. 143 156 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Cone8ag1275 198 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676(InterPro)
Cone8ag1275 198 SUPERFAMILY Retrovirus zinc finger-like domains 135 196 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 ProSiteProfiles Zinc finger CCHC-type profile. 180 195 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone8ag1275 198 Gene3D - 175 198 - -
Cone8ag1275 198 Gene3D - 138 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1269 Cone-Chr17:9144897 Cone8ag1275 Cone-Chr8:10525508 9.27E-28 dispersed
Cone6ag1686 Cone-Chr6:12782102 Cone8ag1275 Cone-Chr8:10525508 2.32E-22 dispersed
Cone8ag1275 Cone-Chr8:10525508 Cone9ag1607 Cone-Chr9:11498760 1.05E-06 dispersed
Cone12ag1224 Cone-Chr12:9510955 Cone8ag1275 Cone-Chr8:10525508 1.91E-56 wgd
Cone8ag0853 Cone-Chr8:8472957 Cone8ag1275 Cone-Chr8:10525508 7.43E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g135 . . . . . Bpe12g00116 . . Cmo19g00739 . . . . . Sed01g3135 . Cpe15g00585 Bhi05g01731 Tan02g0700 Cmetu01g0199 . Hepe02g0435 . . Cla02g00437 Cam02g0446 Cec02g0444 Cco02g0462 Clacu02g0448 Cmu02g0442 Cre02g0776 Cone12ag1224 Cone8ag1275 . . . . . Cme01g01275 Blo04g00561 Blo13g00516 Bda15g01039 Bda14g00610 Bpe15g00819 . Bma03g00602 . . . . . Cma19g00731 . Car19g00560 . . . . . . . . . . . . . . . . Lsi11g01191 . Chy01g00689 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001587 3 2 3 3 4 2 3 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 0 1 3 2 3 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46722 PF01156 IU_nuc_hydro 2.30E-66 No_clan Cone TF