Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1283 ATGGACGACGGTGAGCTCGAGTGCTCGAACCAAGAACTGTTTTCGAGCCAAAACATGGTTGGTGAGCTTCTAAGCAGTAGCTCATTCAACGGTTTCCTGGACCTAGATGGACTTTTCAAGGAGGCTCCTCAAGCTTGTATTCACACACACACTTGCAATCCTCCGGGCCCAGACCACAAGCACACACACACCTGTTTTCATGCCCATATTGCCTCCACCCCGACCGAGGAAGATGAGGCTGCCAATGAGGCGGAATCAACCAAGAAGAAGAAAAAACGGCCATCAGGTAACAGGGATGCAGTTCGAAAATATCGGGAGAAGAAGAAGGCCCGGGCAGCATCATTAGAAGATGAGGTAGTGAGGTTGAGAGCTTTGAATCAGCAGCTGGTGAAGAAGTTGCAGGGTCAAGCTGCATTAGAGGCAGAGATTGCTAGGCTGAGGTGTTTGCTTGTGGATATTCGGGGAAGGATTGATGGGGAGATTGGGACTTTTCCGTATCAGAAATCCATCAATCCGAACTTGAACTCGTTGAATTTGATGAACAATATTGGTGGTCCTGGTATTGGCGCTTACATGATGAATCCATGTAATCTGCAGTGTGATGATCAGGTGTACTGCCACCAATTAGGAGGGGTTGATGGAAAAAATGGAGATGGTGGCACTGGAGTAGATGGGCAAGGAACTCGTGCTTGTGAATTTGAGAATAATTTTCAGTGTTCAGCAGGTCAGAACTTGAGTGGATCAAAGAAGTTTCCAGGCCGTTGA 765 47.71 MDDGELECSNQELFSSQNMVGELLSSSSFNGFLDLDGLFKEAPQACIHTHTCNPPGPDHKHTHTCFHAHIASTPTEEDEAANEAESTKKKKKRPSGNRDAVRKYREKKKARAASLEDEVVRLRALNQQLVKKLQGQAALEAEIARLRCLLVDIRGRIDGEIGTFPYQKSINPNLNSLNLMNNIGGPGIGAYMMNPCNLQCDDQVYCHQLGGVDGKNGDGGTGVDGQGTRACEFENNFQCSAGQNLSGSKKFPGR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10565509 10567089 + Conep08aG0132100.1 Cone8ag1283 443832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1283 254 MobiDBLite consensus disorder prediction 93 108 - -
Cone8ag1283 254 Coils Coil 105 132 - -
Cone8ag1283 254 SMART brlzneu 85 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1283 254 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1283 254 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 178 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Cone8ag1283 254 MobiDBLite consensus disorder prediction 72 109 - -
Cone8ag1283 254 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1283 254 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1283 254 MobiDBLite consensus disorder prediction 72 92 - -
Cone8ag1283 254 CDD bZIP 87 144 - -
Cone8ag1283 254 Gene3D - 76 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1231 Cone-Chr12:9551826 Cone8ag1283 Cone-Chr8:10565509 2.51E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46724 PF16884 ADH_N_2 3.20E-23 CL0296 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1283 K25785 - csv:101208161 275.789