Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1291 ATGTCGAAAGAAGTGGGCGAAGAAGGAGCCAGACACCATGGCAAGGACTATGTGGACCCACCACCGGCACCACTCCTCGACTTCGCTGAGCTCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCTGAGTTCATCGCCACCCTGCTCTTCCTCTACATCACCGTCGCCACCGTCATCGGAAACAACAAGCAGAAAGACGCCTGCGCCGGCGTCGGAATCCTGGGCATTGCATGGGCTTTTGGCGGCATGATCTTCGTCCTTGTCTACTGTACCGCCGGCATTTCCGGTGGTCATATCAACCCAGCCGTGACGTTCGGACTGTTCCTAGCGAGAAAAGTGTCGCTGATCCGCGCGGTCGCGTACATAGTGGCTCAGTCGCTGGGAGCCATCGCCGGCGTAGGGCTGGTCAAAGCTTTCATGAAGAGCGCATACAACGCGAACGGCGGTGGCGCGAATCTCATCTCTCCTGGCTACAACAAGGGCACTGCTCTAGGCGCTGAGATTATCGGAACCTTTGTTCTAGTCTACACCGTTTTCTCAGCTACTGACCCAAAGAGGAGCGCCCGTGACTCGCACGTGCCCGTCCTGGCCCCACTACCTATCGGCTTTGCCGTGTTCATCGTCCACTTGGCGACTATTCCGATCACAGGAACTGGTATTAACCCTGCTAGAAGCTTTGGTGCGGCTGTGATCTACAATAATGAGAAAGTTTGGGACGAGCACTGGATCTTCTGGGTCGGTCCGTTCGTCGGAGCGTTGGCCGCGGCGGCGTACCACCAGTATATTCTCAGAGCGGCAGCGATTAAGGCGTTGGGATCTTTCAGGAGCAACCCTAGCAACTAA 843 56.47 MSKEVGEEGARHHGKDYVDPPPAPLLDFAELKLWSFYRALIAEFIATLLFLYITVATVIGNNKQKDACAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYIVAQSLGAIAGVGLVKAFMKSAYNANGGGANLISPGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNNEKVWDEHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10585800 10587075 + Conep08aG0132900.1 Cone8ag1291 443840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1291 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cone8ag1291 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cone8ag1291 280 Pfam Major intrinsic protein 30 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1291 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cone8ag1291 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cone8ag1291 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0517 Cone-Chr18:2534956 Cone8ag1291 Cone-Chr8:10585800 4.37E-155 dispersed
Cone1ag0730 Cone-Chr1:6731374 Cone8ag1291 Cone-Chr8:10585800 1.32E-158 dispersed
Cone1ag1352 Cone-Chr1:56550924 Cone8ag1291 Cone-Chr8:10585800 3.84E-152 dispersed
Cone5ag0337 Cone-Chr5:1440129 Cone8ag1291 Cone-Chr8:10585800 1.33E-151 dispersed
Cone5ag1231 Cone-Chr5:5673499 Cone8ag1291 Cone-Chr8:10585800 4.84E-161 dispersed
Cone6ag0785 Cone-Chr6:4000558 Cone8ag1291 Cone-Chr8:10585800 2.87E-135 dispersed
Cone8ag0296 Cone-Chr8:1713588 Cone8ag1291 Cone-Chr8:10585800 3.60E-134 dispersed
Cone8ag1255 Cone-Chr8:10463476 Cone8ag1291 Cone-Chr8:10585800 5.27E-23 dispersed
Cone12ag1237 Cone-Chr12:9577496 Cone8ag1291 Cone-Chr8:10585800 8.14E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1291 K09872 - cit:102624436 510.375