Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1294 ATGGAAAGTGGGCCACAGGAAAGAGTCCATAAACCAAATGACTCTACCGTGAGTGCACTCAATAGTATTTTGAACCGAGATGATGCTATCACAAGTGCTTCTGTTAGTGAACCAAATGTAAATTGTGATAACAACAAATCTAACAGAGTCAACAAGGTGGTGAGTGAAAAACAGAATATTCCCTCTATTTACAGGCAAGATGTTGTGAGGAGCAAGCAGAATGGCATGATTGGTATTGTGACTGAAGTTGCTGGAGATGCAGATTCAGATAGTTCAACAGATGATGATGAGGATGATGATGATGATGATGATGACGAGGACGACGACGATGATATTGATGATGGAGACGAAAAGGGTGAACACAGGGATAATGGTGACTGCAATTTTTGTAATGGCAATGATGATTCAAAAACTAGCATTGGTGGTAATAAGGATGGTCCCCTCTCTCCTGATCAAGTTCGAGTTCTTTGGAAGGATGAAAGTGAGTCAACTCCAAATGTTACTGATTTGGTAGTTATTGATCGAGCATTCTTACATGGTGATTATGTTGCTTCTGCTACCGACCCAACCGGGCAAGTAGGTGTTGTTGTGGATGTCAACATTTCTGTTGACTTGCTTTCACCTGATGGCTCTATCATAGAAGATGTGTCATCCAAAGACTTAAAGCGTGTGAGAGATTTCACTGTGGGTGATTATGTGGTCCTCGGTCCCTGGCTTGGTAGAATTGATGATGTCCTAGATAATGTGACGGTGTTGTTTGATGATGGATCCATGTGTAAAGTTATGAAAGCAGAGCCTTTGCGTCTCAAACCAATTTCCAAGAATATCCTTGATGATGTGAATTTTCCTTACTACCCTGGACAACGTGTGAGGGCAAGCTCATCATCAGTTTTCAAAAATGCTAAATGGATTTCTGGTAGTTGGAGACATAACCGGTTGGAAGGTACTGTGGCTAAAGTTACAGTTGGTTCGGTATTTATCTATTGGATAGCCTCTGCTGGCTATGGGCCGGATTCTTCTACTGCCCCTGCAGAAGAACAAAGTCCGAAGAATCTGAAGTTGTTGTCCTGCTTTGCTCATGCTAATTGGCAACTGGGTGACTGGTGTCTTTTTCCCTCTTTGTCATCCTTTAATGGGTTGGACAAGGAGTTGTCAAAGGTGGGACTTCATGATTCAATTGAAAATGAATTAGATCTTGTGCAGACTGGGATTGGTGGTGATTTAGAAGAAGTCTCGCTAGATGAAAATGGGAAAAATGAATCCTTGGATCTTGAGCCAATAGCTGCATCAGAAGTTCATGATCAAAATTTTGAAAGTAATATCTCACCTGAAGCTAGCTCTTGTGCTAGTTCTTTGACGGTCTCAAAGGAGCCTGGTCATGAAAGTTGGCCTCTTCATCGCAAAAGAGTTCGTAAAGTCGTGGTTCGGAGGGATAAGAAGGCTCGAAAGAAAGAGGAAATTTTTGAAAGAGCCCTTTTAATCGTCAATACTACATCAAAAATAGATGTTGCATGGCAAGATGGTAATACAGGACGAGCTCTCAATTCAACAAGTTTAATTCCAATTGATAATCCTGGTGATCATGAATTTGTTGCTGAACAATATGTGGTGGAGAAAGCCTCTGACGATGATGAGAACATTGGTGAAGGTAAGCGAGTTGGGGTTGTAAAAAGGGTTAATGCCAAAGAACGGACAGCTTCAGTGAGATGGTTAAGGCCAGTTGTTAGAGCAGAAGATCCTAGAGAGTTCGATGAGGAGGCAATCGTAAGTGTATATGAACTGGAGATGCATCCAGATTATGAGTATTGTTATGGGGATGTGGTTGTGCGGTTGTCACCAGTGTCTGTTTTCACAGAAACAGATCCTGGTGGAGACTCTACCGAAGAATCAAAGAACCAAATTGGATCCGATGAGGTCAAACGTGATATAAAGAAACATTCAGGTTCTATGAAAGTAAAGGATTTGTCTGACAGTAAGGGTTTTCTGGAAGCCGATCTCTCTTGGGTAGGCAATATAACAGGACTTAAGAATGGTGATATTGAAGTTACTTGGGCAGATGGGATGGTTTCAACGGTTGGTCCCCAAGCAATTTATGTTGTTGATCGAGATGATGACGATGAGTCAATTGGTGCTGGAAGTGACATCAATGATGATGCTGCTAGTTGGGAAACTGTCAATGACAAAGAAATGGATTCATTTGAGAATTCCAATGAGGATATTGAGGTGCAAGATGCCACTGATGCGAAATCTGTGGTGGAGAATGGAGAAATGAATTCTTGCATAAATCCAGCATTCTCTGTTCCATTGGCTGCAATGCGGTTTGTTTCGAGACTAGCCTCAGGAATATTCTCATTGGGACAAAAGAATTTGACCCGAACTGATTTGGATTCAAATGGTGACTGTAAATTAAACTCTGAGGGAATGATAGATATTTCTGAAGAACAGAGCTCCAATGAGGAGTTCACCTCTCACCACCGGGATATCGCTGATAGTTCTAGACTGAAAAATGATAGCAGAAAAGGAGAAAAACATGTTGCTGCAGAGAATTTAGAAGTTTTGGAAGCGGCTGAAACTTTATGCAGCATGAGTTCCAAAGATCTTGTTTGTAGCTTCAAACACTTTGATATCGCTAAAGATCCTTTGGACCATCACTTTCTTGGAAATGAACAGAATAACAATGGAAGGAAGTGGTTCAAGAAGGTCCAGCAAGATTGGAACATCCTTCAGAATAACCTTCCCGACACAATCTATGTTCGAGTCTATGAAGATCGGATGGATCTCTTAAGGGCTGTCATAATAGGTGCATATGGGACCCCTTACCAAGATGGTCTCTTCTTCTTTGATTTCCACCTTCCACCAGATTATCCTGATGTTCCACCAGCAGCATACTATCACTCAGGTGGGTGGCGGATAAATCCAAATTTGTACGAGGAAGGCAAGGTGTGCCTTAGCCTGCTAAATACTTGGACCGGCAGGGGAAATGAAGTTTGGGATCCAAAGTCCTCTAGCATCCTTCAAGTACTTGTTTCCCTACAAGGGCTAGTTTTGAACTCTAAGCCATATTTCAATGAAGCTGGATATGATAAACAGGTTGGTACAGCTGAAGGAGAAAAAAATTCCTTGTCGTATAATGAGAATACCTTCCTACTCAGCTGTAAGACAATGATGTATCTCATGCGGAAGCCCCCTAAGGACTTTGAAGAGCTTATCAAAGACCATTTCAGAATTCGTGGTTATTACATTCTTAAGGCATGTGATGCATATATGAAAGGTCAACTAATTGGATCTCTGAACAAGGATGCTACCATAACTGATAACGCTGAGGTTAACTCTACAACAGTTGGTTTTAAGTTGATGTTGGCAAAGATTTCTCCAAAGCTAGTGTCGGCATTGAGCGAAGTTGGTGTTGATTGTCAAGAATTTAAACATCTTCACCAGACAGTATAG 3447 41.49 MESGPQERVHKPNDSTVSALNSILNRDDAITSASVSEPNVNCDNNKSNRVNKVVSEKQNIPSIYRQDVVRSKQNGMIGIVTEVAGDADSDSSTDDDEDDDDDDDDEDDDDDIDDGDEKGEHRDNGDCNFCNGNDDSKTSIGGNKDGPLSPDQVRVLWKDESESTPNVTDLVVIDRAFLHGDYVASATDPTGQVGVVVDVNISVDLLSPDGSIIEDVSSKDLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVLFDDGSMCKVMKAEPLRLKPISKNILDDVNFPYYPGQRVRASSSSVFKNAKWISGSWRHNRLEGTVAKVTVGSVFIYWIASAGYGPDSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLFPSLSSFNGLDKELSKVGLHDSIENELDLVQTGIGGDLEEVSLDENGKNESLDLEPIAASEVHDQNFESNISPEASSCASSLTVSKEPGHESWPLHRKRVRKVVVRRDKKARKKEEIFERALLIVNTTSKIDVAWQDGNTGRALNSTSLIPIDNPGDHEFVAEQYVVEKASDDDENIGEGKRVGVVKRVNAKERTASVRWLRPVVRAEDPREFDEEAIVSVYELEMHPDYEYCYGDVVVRLSPVSVFTETDPGGDSTEESKNQIGSDEVKRDIKKHSGSMKVKDLSDSKGFLEADLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVDRDDDDESIGAGSDINDDAASWETVNDKEMDSFENSNEDIEVQDATDAKSVVENGEMNSCINPAFSVPLAAMRFVSRLASGIFSLGQKNLTRTDLDSNGDCKLNSEGMIDISEEQSSNEEFTSHHRDIADSSRLKNDSRKGEKHVAAENLEVLEAAETLCSMSSKDLVCSFKHFDIAKDPLDHHFLGNEQNNNGRKWFKKVQQDWNILQNNLPDTIYVRVYEDRMDLLRAVIIGAYGTPYQDGLFFFDFHLPPDYPDVPPAAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLSCKTMMYLMRKPPKDFEELIKDHFRIRGYYILKACDAYMKGQLIGSLNKDATITDNAEVNSTTVGFKLMLAKISPKLVSALSEVGVDCQEFKHLHQTV 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10596994 10602155 - Conep08aG0133200.1 Cone8ag1294 443843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 815 841 - -
Cone8ag1294 1148 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 57 1143 - GO:0061631(PANTHER)
Cone8ag1294 1148 FunFam Probable ubiquitin-conjugating enzyme E2 23 861 1135 - -
Cone8ag1294 1148 Pfam Ubiquitin-conjugating enzyme 901 1031 IPR000608 -
Cone8ag1294 1148 CDD UBCc 899 1049 IPR000608 -
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 34 53 - -
Cone8ag1294 1148 SMART ubc_7 899 1056 - -
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 88 116 - -
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 618 638 - -
Cone8ag1294 1148 Gene3D Ubiquitin Conjugating Enzyme 862 1132 IPR016135 -
Cone8ag1294 1148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 896 1056 IPR000608 -
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 817 841 - -
Cone8ag1294 1148 MobiDBLite consensus disorder prediction 81 130 - -
Cone8ag1294 1148 SUPERFAMILY UBC-like 883 1063 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1294 K10581 - - vvi:100258896 1420.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1462 Cone-Chr12:10490072 Cone8ag1294 Cone-Chr8:10596994 2.11E-87 dispersed
Cone14ag1066 Cone-Chr14:8974807 Cone8ag1294 Cone-Chr8:10596994 6.20E-89 dispersed
Cone15ag1055 Cone-Chr15:8740129 Cone8ag1294 Cone-Chr8:10596994 9.83E-89 dispersed
Cone1ag0164 Cone-Chr1:916577 Cone8ag1294 Cone-Chr8:10596994 3.22E-188 dispersed
Cone5ag1708 Cone-Chr5:12140010 Cone8ag1294 Cone-Chr8:10596994 4.14E-195 dispersed
Cone6ag0142 Cone-Chr6:723700 Cone8ag1294 Cone-Chr8:10596994 1.70E-77 dispersed
Cone6ag1016 Cone-Chr6:5680063 Cone8ag1294 Cone-Chr8:10596994 4.10E-202 dispersed
Cone8ag1294 Cone-Chr8:10596994 Cone8ag1509 Cone-Chr8:11416383 1.65E-84 dispersed
Cone12ag1239 Cone-Chr12:9584266 Cone8ag1294 Cone-Chr8:10596994 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41