Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1295 ATGACCCAAGACGTTGAAATGAAAGAGCTTCCAGCTCCTTCCAATTCTGCTTCTTCAATTTCACCTTCAACTTTACACCATTTGAAGGAGATTGCGTCACTCATTGAGACCGGTGCATATACCAAGGAGGTTCGGCGAATTTTTCGTGCGATCCGTCTAACCATGGCTTCAAGAAAGAAGCTGAAGGCACCCGTGCTTTCTGCGTTCTTGAATTTTGCTCTCACTCCAGGATCTGAGGTGCATTCTAGGTTATCCTGCTATCTTCCCAAGGAAGATGATCATGACATGGATATCGACACTGCAACATCTGCGACTCAGTCAGCTGCAACTCAAGCATCAGTAAAACACCCATATCCAGAACTGGAGATATACTGCTACTTGGTTGTGCTGATATTTCTGATCGACCAAAAGAGGTACAGTGAGGCTAAGGCTTGTGCTTCAGCAAGCATTTCTCGACTGAAGAACATCAACAGAAGAACTGTTGATGTGCTTGCATCAAGGCTGTACTACTATTATTCGTTAAGCTATGAACTTACAGGCGATCTTGCTGAAATAAGGGGTAACCTTCTTTCCCTCCACCGTATTGCAACCTTACGCCATGATGAGCTGGGACAGGAAACACTTCTCAACCTGCTACTTCGCAATTACCTCCACTACAATTTGTATGATCAGGCAGAGAAGCTGAGGTCCAAGGCTCCCCGATTTGAGGCTCACTCTAATCAGCAGTTTTGCCGGTACCTGTTTTACCTTGGAAAGATCAGGACAATCCAGTTGGAGTACACAGATGCAAAAGAGTCCCTTCTGCAGGCTGCTCGGAAAGCCCCTGCTGCTGCCCTTGGTTTCCGCATTCAATGCAACAAATGGGCAGTCATTGTTCGCTTGCTTCTTGGAGAAATCCCTGAGAGGACTGTTTTCATGCAGAAAGGCATGGAGAAGGCTTTGAAGCCCTACTTTGAGCTTACCAATGCTGTTCGTATTGGAGATCTAGAGCTTTTCAGAACTGTAGCTGAGACTTTCTCAAGTACTTTCAGCTCAGATGGGACCAAGAATCTGATTGTCCGGCTGCGCCACAATGTCATTAGAACAGGGCTACGCAACATTAGCATCTCTTATTCCCGTATCTCTTTGGTTGATGTGGCAAAAAAGCTGAGGTTGGACTCTCCAAACCCCGTTGCTGATGCTGAGAGTATTGTGGCCAAGGCAATCCGAGATGGAGCAATTGACGCCACATTGGATCATGCCAATGGATGGATGGTCTCAAAGGAGACTGGAGATATCTACTCTACAAATGAGCCTCAAATTGCATTCAACTCTAGGATTGCCTTCTGCCTCAATATGCACAATGAGGCCGTTCGTGCTCTTAGATTCCCACCCAATGACCATAAAGAGAAGGAAAGTGCTGAGAAGAGGAGGGAGAGGCAACAGCAGGAGCAAGAGCTTGCGAAACATATAGCCGAAGAGGATGAAGATGATTTCTGA 1479 46.32 MTQDVEMKELPAPSNSASSISPSTLHHLKEIASLIETGAYTKEVRRIFRAIRLTMASRKKLKAPVLSAFLNFALTPGSEVHSRLSCYLPKEDDHDMDIDTATSATQSAATQASVKHPYPELEIYCYLVVLIFLIDQKRYSEAKACASASISRLKNINRRTVDVLASRLYYYYSLSYELTGDLAEIRGNLLSLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPAAALGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALKPYFELTNAVRIGDLELFRTVAETFSSTFSSDGTKNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNDHKEKESAEKRRERQQQEQELAKHIAEEDEDDF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10602721 10606021 - Conep08aG0133300.1 Cone8ag1295 443844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1295 492 MobiDBLite consensus disorder prediction 1 21 - -
Cone8ag1295 492 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 350 443 IPR000717 -
Cone8ag1295 492 MobiDBLite consensus disorder prediction 455 492 - -
Cone8ag1295 492 Coils Coil 459 486 - -
Cone8ag1295 492 Gene3D - 247 442 - -
Cone8ag1295 492 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 488 IPR050756 GO:0006511(PANTHER)|GO:0008541(PANTHER)
Cone8ag1295 492 MobiDBLite consensus disorder prediction 455 485 - -
Cone8ag1295 492 SMART PCI/PINT associated module 179 350 - -
Cone8ag1295 492 Pfam PCI domain 341 421 IPR000717 -
Cone8ag1295 492 FunFam 26S proteasome non-ATPase regulatory subunit 3 125 448 - -
Cone8ag1295 492 Pfam Proteasome regulatory subunit C-terminal 425 491 IPR013586 GO:0000502(InterPro)|GO:0030234(InterPro)|GO:0042176(InterPro)
Cone8ag1295 492 ProSiteProfiles PCI domain profile. 244 425 IPR000717 -
Cone8ag1295 492 SUPERFAMILY Winged helix DNA-binding domain 352 426 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1295 K03033 - - cit:102622301 791.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1240 Cone-Chr12:9590744 Cone8ag1295 Cone-Chr8:10602721 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1240 Cone8ag1295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65