Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1300 ATGTTACCGGAGTTGATGAACTTTTTTCGGGCCTGTTTTGGGCCGAGGTCGGATCGAACCGGTCTGGGTGTAGATTGCAGGGGTCATCAAGACGGTCTCCTATGGTACAAAGATCATGGGCCTCACTCTACTGGTGAATTCTCAATGGCTGTAATCCAAGCCAACAATTTACTTGAGGACCAGAGCCAGATCGAGTCAGGCAGTTTGAGCTCGCTAGATTGTGGTCCCTATGGTACCTTTGTTGGTGTATACGACGGGCATGGTGGGCCTGAGACTTCTCGCTATATCAATTATCACCTCTTCCAACATCTCAAAAGATTTACTTTGGAGCAACAATCGATGTCTATGGAGGTAATAAGAAAGGCGTTTCAAGCCACGGAAGAAGGTTTTATCTCTCTAGTCACTAAACAGTGGCCTGTCAAGCCGCAAATTGCAGCTGTTGGATCATGCTGTCTTGTAGGAGTGATTTGTGATGGGACACTTTACATAGCCAATGCGGGGGATTCCCGTGCCGTATTGGGGAGAGCTGTAAAAGCAACAGGAGGGGTTCTGGCTGTTCAGTTATCAGTAGAGCACAATGCTAGTATCGAGTCTGTTAGACAAGAGCTTCAGTCTCTGCACCCGGACGACTCACAAATTGTCGTTTTGAAGCATAATGTATGGAGAGTAAAGGGTCTTATACAGATTTCTAGATCCATTGGTGATGTGTACTTGAAGAAGGCCGAGTTCAATAGGGAACCTCTGTACGCTAAGTTTCGCCTTCGTGAGCCGATCAAAAAACCGATCTTGAGTTCTGAACCCTCCGTTTCTGCGATACAATTGCAGCCACATGACCAGTTTGTCATTTTTGCATCAGACGGCCTTTGGGAACAGCTTAGCAATCAGCAAGCAGTTGAAATAGTTCAAAAGCATCCACGTAAAGGAATTGCAAGGAGGCTTGTGAAAGCTGCCCTTCAAGAAGCAGCAGCAAAGAGAGAAATGAGGTATTCAGACTTGAAGAAGATAGACCGAGGTGTACGCCGCCATTTCCACGATGATATTACTGTAGTAGTTGTGTTTCTGGACCCGAATCTTGTTTTCCAGGCCAGTTCTGTCAAAAGCCTGAGTTTATCCTTGAAAGGGGGTGGAATTAACCTCTCCCCTAACACTCTAGCTCCTTGTAGTAACTAA 1170 46.15 MLPELMNFFRACFGPRSDRTGLGVDCRGHQDGLLWYKDHGPHSTGEFSMAVIQANNLLEDQSQIESGSLSSLDCGPYGTFVGVYDGHGGPETSRYINYHLFQHLKRFTLEQQSMSMEVIRKAFQATEEGFISLVTKQWPVKPQIAAVGSCCLVGVICDGTLYIANAGDSRAVLGRAVKATGGVLAVQLSVEHNASIESVRQELQSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKKPILSSEPSVSAIQLQPHDQFVIFASDGLWEQLSNQQAVEIVQKHPRKGIARRLVKAALQEAAAKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDPNLVFQASSVKSLSLSLKGGGINLSPNTLAPCSN 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10628497 10630766 + Conep08aG0133800.1 Cone8ag1300 443849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1300 389 ProSitePatterns PPM-type phosphatase domain signature. 80 88 IPR000222 GO:0043169(InterPro)
Cone8ag1300 389 SMART PP2C_4 40 352 IPR001932 -
Cone8ag1300 389 SUPERFAMILY PP2C-like 55 355 IPR036457 -
Cone8ag1300 389 Pfam Protein phosphatase 2C 77 323 IPR001932 -
Cone8ag1300 389 FunFam Phosphatase 2C family protein 35 364 - -
Cone8ag1300 389 PANTHER PROTEIN PHOSPHATASE 42 353 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone8ag1300 389 ProSiteProfiles PPM-type phosphatase domain profile. 43 354 IPR001932 -
Cone8ag1300 389 Gene3D - 36 363 IPR036457 -
Cone8ag1300 389 CDD PP2Cc 47 354 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0077 Cone-Chr10:444149 Cone8ag1300 Cone-Chr8:10628497 1.19E-140 dispersed
Cone10ag1033 Cone-Chr10:7202376 Cone8ag1300 Cone-Chr8:10628497 1.85E-124 dispersed
Cone12ag1055 Cone-Chr12:8757750 Cone8ag1300 Cone-Chr8:10628497 1.90E-131 dispersed
Cone17ag1098 Cone-Chr17:8157709 Cone8ag1300 Cone-Chr8:10628497 8.94E-200 dispersed
Cone20ag0618 Cone-Chr20:3681526 Cone8ag1300 Cone-Chr8:10628497 3.30E-209 dispersed
Cone3ag0091 Cone-Chr3:529818 Cone8ag1300 Cone-Chr8:10628497 2.22E-143 dispersed
Cone3ag1016 Cone-Chr3:28992709 Cone8ag1300 Cone-Chr8:10628497 4.88E-126 dispersed
Cone8ag1089 Cone-Chr8:9794240 Cone8ag1300 Cone-Chr8:10628497 1.08E-125 dispersed
Cone8ag1300 Cone-Chr8:10628497 Cone12ag0679 Cone-Chr12:6226908 3.17E-22 dispersed
Cone12ag1243 Cone-Chr12:9613531 Cone8ag1300 Cone-Chr8:10628497 1.65E-262 wgd
Cone12ag0836 Cone-Chr12:7563588 Cone8ag1300 Cone-Chr8:10628497 6.94E-210 wgd
Cone8ag0870 Cone-Chr8:8576582 Cone8ag1300 Cone-Chr8:10628497 2.09E-211 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1300 - - - 0.0