Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1304 ATGAATACCGCACACAAGTTGTTCGATGAAATGCCCGAGAGAGACACTGTCTCGTGGAATTTGATGCTATCGGGCTATATGTCTTGTAGTAGGAGTAGATATATCGAAGCTGCAAGGAATCTGTTCGATCAAATGCTGGAAAAAGATTGTGTTTCATGGAACACTATGATTAGTGGGTATGCGAAGAATGGATTTATGGACAGAGCAATCGAACTTTTTAACAGTATGCCAAACAAAAATGTTGTCTCTTGGAACGCTATGATTTCTGGGTATTTGAAAAATGGCTGTGTGGAGAGAGCTGTTGAATTTTTTCAGAAGATGCCAGAAAGAGACTCTGCTTCTCTTAGTGCACTTATATCGGGTCTGATTCAGATTGGTGAGTTGGATCGAGCTGAAAGAATTCTAATTCAGTTTGGAGATAGGAAGGATAGTAGTGGAGCAGATTTGGTGCGTGCTTATAATACTTTGATTGCAGGGTATGGAGAGAGAAGAAAAGTTGAAGAAGCTCGGAATTTGTTTGAACAGATCCCATCTCTCTGTGATGGGAGAAAACATGGCAATCAGATATTTGTTAGAAATGTAATATCATGGAATTCTATGATAATGGGTTATGTCAAAGCAGGTGATGTTATGTCTGCCCGAGAACTTTTCAACGAAATGACAGAACGGGATACATGTACGTGGAATACAATGATAAGTGGCTATGTTCAAATATCAGACATGAAAGAGGCCTCAAATCTCTTTAATAAAATGCCAAATCCTGACCCATTGACATGGAATTCAATGATTTTTGGATTTTCCCAAATAGGTGGGTTGGAGCTAGCTCATAAATTCTTCAGGATGATGCCTCAGAAGAGCCTAGTCTCATGGAATTCTATTATAGCAGGATATGAGAAAAATGAAGATTATAAAGGTGCAATTAAGCTCTTTATTCAAATGCAGCATAAAGGAGAGAGACCTGATAGGCACACATTATCTTCAGTTCTAAGTATTTGTACTGGGTTAGTGGATTTATTCTTAGGAATGCAGATTCATCAATTAGTCAGAAAGATGTTTATTCCTGATTTGCCAATAAACAACTCTCTAATCACTATGTACTCAAGATGTGGGGCCATAATAGACGCAGAGGCTGTTTTTAATGAGATGAAACTTAAAAAGGATGTGATATCTTGGAATGCCTTAATCGGAGGTTATGCATCTCATGGACTTGCTTCTGAGGCTATAGGAATGGTTAAGTCAATGAAGCAGTTTAAGGTGCAACCCACTTATATTACTTTCATTTCGATTTTGAATGCTTGTGCGCATGCAGGATTGGTCGAAGAAGCATGGAGGCAATTTCACTCTATGGTTAATGAATACGGTATTGAACCACGGGTTGAACATTTTGCAGCCCTTGTGGATGTTTTGGCCCGAAGTGGACAGCTTAAAGAGGCCATTGGTTTGATCAAGAGCATGCCTTGTGAACCAGATAGGTCTGTGTGGGGTGCATTGCTTGGGGGCTCAAGGGTTCATAACAATGTAGAATTGGCTCGAGTTGCAGCTGAAGCATTAATGAGACTTGAACCAGGAAGCTCAGCTCCATATGTGTTGTTATATAACATGTATGCTGATGTAGGGCAATGGGAAGAAGCTGAAAAGGTGAGAGCAATGATGGAAACAAGATTTATTCAGAAAAAAGCAGGGTACAGTCGGGTTGGTTCTTCTTGTGGGTGA 1713 39.87 MNTAHKLFDEMPERDTVSWNLMLSGYMSCSRSRYIEAARNLFDQMLEKDCVSWNTMISGYAKNGFMDRAIELFNSMPNKNVVSWNAMISGYLKNGCVERAVEFFQKMPERDSASLSALISGLIQIGELDRAERILIQFGDRKDSSGADLVRAYNTLIAGYGERRKVEEARNLFEQIPSLCDGRKHGNQIFVRNVISWNSMIMGYVKAGDVMSARELFNEMTERDTCTWNTMISGYVQISDMKEASNLFNKMPNPDPLTWNSMIFGFSQIGGLELAHKFFRMMPQKSLVSWNSIIAGYEKNEDYKGAIKLFIQMQHKGERPDRHTLSSVLSICTGLVDLFLGMQIHQLVRKMFIPDLPINNSLITMYSRCGAIIDAEAVFNEMKLKKDVISWNALIGGYASHGLASEAIGMVKSMKQFKVQPTYITFISILNACAHAGLVEEAWRQFHSMVNEYGIEPRVEHFAALVDVLARSGQLKEAIGLIKSMPCEPDRSVWGALLGGSRVHNNVELARVAAEALMRLEPGSSAPYVLLYNMYADVGQWEEAEKVRAMMETRFIQKKAGYSRVGSSCG 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10639320 10641032 - Conep08aG0134200.1 Cone8ag1304 443853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 457 IPR002885 -
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 142 238 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 239 336 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 337 440 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 360 569 - -
Cone8ag1304 570 FunFam Pentatricopeptide repeat-containing protein 192 253 - -
Cone8ag1304 570 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 81 221 IPR050421 -
Cone8ag1304 570 Pfam PPR repeat 152 176 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 227 251 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 82 110 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 360 384 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 258 285 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 17 50 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 195 223 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 464 486 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat 51 81 IPR002885 -
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Cone8ag1304 570 SUPERFAMILY TPR-like 69 547 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 80 141 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Pfam E motif 504 565 IPR046848 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 226 251 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 82 111 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 389 422 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 51 81 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 152 176 IPR002885 -
Cone8ag1304 570 NCBIfam pentatricopeptide repeat 195 224 IPR002885 -
Cone8ag1304 570 SUPERFAMILY TPR-like 58 258 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 Pfam PPR repeat family 286 330 IPR002885 -
Cone8ag1304 570 Pfam PPR repeat family 386 435 IPR002885 -
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 49 83 IPR002885 -
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cone8ag1304 570 Gene3D Tetratricopeptide repeat domain 441 568 IPR011990 GO:0005515(InterPro)
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cone8ag1304 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 48 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1304 Cone-Chr8:10639320 Cone11ag0408 Cone-Chr11:2022739 1.54E-64 dispersed
Cone8ag1304 Cone-Chr8:10639320 Cone6ag0947 Cone-Chr6:4940052 1.27E-64 transposed
Cone8ag1304 Cone-Chr8:10639320 Cone6ag0246 Cone-Chr6:1137844 3.42E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19