Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1305 ATGGATTCGGCCAGCTCGATCAGTAAATCGTTAAAAGCCCATCTCTCTGCCAAGAACATAAGGAAAATAACAGCAGCTGGAAGCGGCCATGGAGGAGCAACCGATTCCTGCCACGAAGAGCTCCCCATTCTCTCAGATCATCGCCGCTCAATTACAGCCCTTGATCATCGTCCGTCTGAGTTTATCCTCAAGGTTGTAGACACCTCCATGTCATCATCCACGGACCCCACAACAACCACCACCCCTAGTAACGACGCCAGCATTAATTGGCGGGAACCGATTAACGGCAAGTACGAATTCTGGAAGAACGAATTAGGAGAAGATCGTCATCATCATGATCCAGAAAATCAAAATGGTAGTATCGATCAAGGTGGAGATCCACCTAATTTAAATCTCATAGGTCAGTTTTTATTCCAGCAGAAACTCCCCGCCGGCCAGATGACGTCATTCAACGTGGATTTGGAAAAGATGAGCGACGATACGGCATCATCGAAGGAGCTGAAAGTCTCGTTCCACGGCGACGATAACTCCGATAATTTGCTCCGAAGCGGCCGATACAGAGACTCAGTACAGGATAGTAACGATGCAGGTAATAATTCCGATCAGGTTCTAAGATGCTCATCAAACGCAGCGTTTCAGAGGGACGAAATCTCTTTCAGGAGGAAACCTACTAATTTATTAAGGGCAAAAACTAACAAGTCGAGGTTAATGGACCCACCACCTGAAGATGATCGACAGTCCGGAAAGGACAATATAAAAAAATCCGGCCAAATGCGATCCGGATTGTTGGGCAAACCGGATGATGACGATGACGACCCATTTTTCGACGATGATCTTCCAGATAAGTACAAGAAGACCAAATTCAGTGCCCTAATTTTAATAGAATGGCTGAGCTTGATTTTGATCATAGGGGCTTTAATTTGCACTCTCTCAATCCCTGAATTGAGAACTAAAAGCCAATGGAAACTTAAATTATGGAAATGGGAAGTTCTAATTTTGGCCTTGATCTGCGGGAGATTAGTTTCAGGTTGGGGAATTAGGGTTATTGTGTTCTTCATAGAGAGAAATTTCCTTCTACGCAAAAGGGTTCTTTATTTCGTATATGGGATCAGAAATGCAGTACAGCGTTGTCTCTGGCTAGGTCTTGTTCTACTGACATGGACACTATTGTTTGATGAAAAAGTTGAGAGAGCAACAAACAGCAATATGCTTAAGAATGTGACCAAGATCTTGGTATGTCTGTTACTAGGTACTTTAGTATGGTTACTGAAAACCCTGATGGTCAAGGTCTTAGCTTCTTCATTCCATGTAAGTACTTACTTTGACAGAATCCGAGAATCTCTGTTTTACCAATACGTAATTGAAACCCTTTCGGGATCACCATTGATCGAGATTCAGAAGATCGAGCAAGAAGAAGAAAGGCTTGCAGATGAGATTAGAAAGTTGCAAAATGCTGCAGGGGCTAATATCCCGCCTGATCTTAAAGCGGCCGCCTTTGGTACTGGTTCTAGGAAGAGTGGAAGGGTGATTGGAAATGTTAATGGAGGGCTTTCGAAAAGTAGTCAATTAGGGAAGAGCTCGAGGTATTCTGGGAATTTGCCAAAGAAAGGAGACAATCATGGGACAATAACAGTTGATCACTTGCATAGGCTGAGTCATAAGAATGTTTCGGCTTGGAACATGAAGAGGTTGATTAATATTGTCCGGCATGGTTCGCTTTCCACGCTTGACGAACAGATTCAAGGTTTTGGTTATGAGGATGAGTCTGCTACCCAGATCAAAAGTGAACTTGAGGCTAAAGCTGCTTCAAAGAAAATCTTTCAGAATGTGGCTAGGCATGGTTTTAGGTATATATATATGGAGGATTTGATGCGTTTCTTGCAAGAAGACGAGGCTTTGAAAACCATGAGCCTTTTCGAAGGAGCATCCGAGAGTCATAGAATTAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCGTTTAGAGAGCGGAGAGCATTAGCTTTGACACTGAATGATACGAAAACAGCCGTGAACAAACTGAACCGAATTGTGAGTGCTGTAGTTGCCATTGCTATAGGAGTCATTTGGCTTCTTATACTTGGAATTGCCACCACCAAATTCCTTCTCTTTGTAAGCTCACAACTTGTCCTCGTTGCTTTTATATTCGGGAACACCTGCAAGACCATTTTTGAATCCATTATCTTCTTGTTCGTGATCCATCCATATGACGTAGGCGATCGCTGTGAAATCGATGGAGCCGAGATGGTTGTAGAGGAAATGAACATCTTGACCACTATCTTTCTAAGAGGCGATAACTCAAGGATTCTATACCCGAACAGCCTCCTTTCAACTAAGGCTATTAACAACTTTTATCGTAGTCCTGATATGGGAGATGCAGTTGAATTCTGTGTCCATATCTCTACTCCTGCAGAAAAGATAGCAACGATGAGACAGAGAATACTAAGTTATATTGAGAACAAGAAGGAGCATTGGTATGCTTCACCTATGGTCATATTCAAGGACATAGAAGACTTGAATAAGGTGAGAATGGCGGTCTGGGTTCAGCATAGAATGAACTACCAGGATGTAGGTGAAAGGTGGATCCGGAGAGCTGTTCTGGTTGAAGAGATGGTTAAGATTTTCCGAGAGCTCGACCTTCAGTACCGTCTTCTCCCGGTAGATGTTAATGTCTGTACATTACCACCCAGTAGGCCCTCTACGGAACCGCTTCCACCTATCAATTGA 2748 43.2 MDSASSISKSLKAHLSAKNIRKITAAGSGHGGATDSCHEELPILSDHRRSITALDHRPSEFILKVVDTSMSSSTDPTTTTTPSNDASINWREPINGKYEFWKNELGEDRHHHDPENQNGSIDQGGDPPNLNLIGQFLFQQKLPAGQMTSFNVDLEKMSDDTASSKELKVSFHGDDNSDNLLRSGRYRDSVQDSNDAGNNSDQVLRCSSNAAFQRDEISFRRKPTNLLRAKTNKSRLMDPPPEDDRQSGKDNIKKSGQMRSGLLGKPDDDDDDPFFDDDLPDKYKKTKFSALILIEWLSLILIIGALICTLSIPELRTKSQWKLKLWKWEVLILALICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGIRNAVQRCLWLGLVLLTWTLLFDEKVERATNSNMLKNVTKILVCLLLGTLVWLLKTLMVKVLASSFHVSTYFDRIRESLFYQYVIETLSGSPLIEIQKIEQEEERLADEIRKLQNAAGANIPPDLKAAAFGTGSRKSGRVIGNVNGGLSKSSQLGKSSRYSGNLPKKGDNHGTITVDHLHRLSHKNVSAWNMKRLINIVRHGSLSTLDEQIQGFGYEDESATQIKSELEAKAASKKIFQNVARHGFRYIYMEDLMRFLQEDEALKTMSLFEGASESHRISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLNRIVSAVVAIAIGVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFESIIFLFVIHPYDVGDRCEIDGAEMVVEEMNILTTIFLRGDNSRILYPNSLLSTKAINNFYRSPDMGDAVEFCVHISTPAEKIATMRQRILSYIENKKEHWYASPMVIFKDIEDLNKVRMAVWVQHRMNYQDVGERWIRRAVLVEEMVKIFRELDLQYRLLPVDVNVCTLPPSRPSTEPLPPIN 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10642036 10645271 - Conep08aG0134300.1 Cone8ag1305 443854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1305 915 Coils Coil 465 488 - -
Cone8ag1305 915 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 113 906 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Cone8ag1305 915 MobiDBLite consensus disorder prediction 69 89 - -
Cone8ag1305 915 SUPERFAMILY Sm-like ribonucleoproteins 732 791 IPR010920 -
Cone8ag1305 915 MobiDBLite consensus disorder prediction 228 273 - -
Cone8ag1305 915 MobiDBLite consensus disorder prediction 235 252 - -
Cone8ag1305 915 FunFam Predicted mechanosensitive ion channel 742 791 - -
Cone8ag1305 915 MobiDBLite consensus disorder prediction 108 130 - -
Cone8ag1305 915 PIRSF Memb_At2g17000 64 913 IPR016688 -
Cone8ag1305 915 Gene3D - 742 791 IPR023408 -
Cone8ag1305 915 MobiDBLite consensus disorder prediction 517 538 - -
Cone8ag1305 915 MobiDBLite consensus disorder prediction 517 533 - -
Cone8ag1305 915 Pfam Mechanosensitive ion channel, beta-domain 730 791 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0976 Cone-Chr3:28412780 Cone8ag1305 Cone-Chr8:10642036 1.34E-157 dispersed
Cone3ag0977 Cone-Chr3:28416623 Cone8ag1305 Cone-Chr8:10642036 1.59E-13 dispersed
Cone4ag1693 Cone-Chr4:12597498 Cone8ag1305 Cone-Chr8:10642036 5.00E-152 dispersed
Cone7ag0765 Cone-Chr7:4764957 Cone8ag1305 Cone-Chr8:10642036 4.94E-171 dispersed
Cone10ag1228 Cone-Chr10:9229824 Cone8ag1305 Cone-Chr8:10642036 0 wgd
Cone12ag1250 Cone-Chr12:9639328 Cone8ag1305 Cone-Chr8:10642036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1305 K22048 - csv:101210264 984.556