Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1316 ATGGCGCCTCTCATGTTTCTTTGCTTCCTTTTGTTGTTGTTCTTCTCCTCCATATCTGCTTGTGATCGCTGTGTTCACAAATCCAAGTCTGCCTTCTTCTCCACAGATTCTGCACTTTCATCTGGAGCATGTGGGTATGGTTCCTTAGCATCTGGCTTTAACAATGGAAACCTTGCTGCTGCCGTGCCCTCCCTTTTCAAAAATGGAGCTGGTTGTGGCGCTTGCTTTCAGATAAGATGCAAGAATGCATCTTATTGCAGCAGAGCAGGGACTAAAGTGATAGTGACGGATTTAAACGTCAACGACCAATACCATTTTGTTCTCAGCAGAAAAGCTTTCAATGAAATGGCTCTAAAGGGACACGACATTTCCAAACTCGGAATTGTCGACGTGGAATACAAGAGGGTGCCTTGTGAGTACAAGAACAAAAATTTGGCGGTGCGTGTGGAAGAATCGAGCCACAAATATTTCCTGGCAATCAAATTCCTATACCAAGGTGGTCAAACTGAAATAGTTAGCGTTGACGTCGCCCAGGTGGGTACTTCGGATTGGAGACCGATGAAGAGGAATTATGGGGCCGTGTGGGACACGAGCAAAGTGCCCAGTGGGGCCCTGCAGTTCCGGTTTGTGGTGACGTCGGGGTTCGACGGGAAGTGGATTTGGGCAAAGAATGTTCTTCCGGCTGGCTGGAAATCTGGAGTTGTATATGACACTGGCCTTCAAATCACTGATATTGCTCAAGAGCCTTGTTCTCCCTGTGATGAAGGCAAGTGGTAA 777 47.23 MAPLMFLCFLLLLFFSSISACDRCVHKSKSAFFSTDSALSSGACGYGSLASGFNNGNLAAAVPSLFKNGAGCGACFQIRCKNASYCSRAGTKVIVTDLNVNDQYHFVLSRKAFNEMALKGHDISKLGIVDVEYKRVPCEYKNKNLAVRVEESSHKYFLAIKFLYQGGQTEIVSVDVAQVGTSDWRPMKRNYGAVWDTSKVPSGALQFRFVVTSGFDGKWIWAKNVLPAGWKSGVVYDTGLQITDIAQEPCSPCDEGKW 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10674331 10675490 + Conep08aG0135500.1 Cone8ag1316 443865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1316 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 238 IPR007117 -
Cone8ag1316 258 SMART dpbb_1 59 133 IPR007112 -
Cone8ag1316 258 Gene3D - 15 139 IPR036908 -
Cone8ag1316 258 PANTHER EXPANSIN-B3 5 244 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cone8ag1316 258 Gene3D - 140 243 IPR036749 -
Cone8ag1316 258 Pfam Expansin C-terminal domain 147 227 IPR007117 -
Cone8ag1316 258 SUPERFAMILY PHL pollen allergen 143 237 IPR036749 -
Cone8ag1316 258 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Cone8ag1316 258 CDD DPBB_EXLA_N 16 140 - -
Cone8ag1316 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 143 IPR007112 -
Cone8ag1316 258 Pfam Lytic transglycolase 60 133 IPR009009 -
Cone8ag1316 258 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576(InterPro)
Cone8ag1316 258 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576(InterPro)
Cone8ag1316 258 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Cone8ag1316 258 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cone8ag1316 258 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0633 Cone-Chr6:3209250 Cone8ag1316 Cone-Chr8:10674331 1.57E-56 dispersed
Cone8ag0450 Cone-Chr8:2867253 Cone8ag1316 Cone-Chr8:10674331 1.11E-57 dispersed
Cone3ag1230 Cone-Chr3:31083531 Cone8ag1316 Cone-Chr8:10674331 3.60E-114 transposed
Cone12ag1261 Cone-Chr12:9682967 Cone8ag1316 Cone-Chr8:10674331 4.55E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1316 - - - 0.0