Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1323 ATGGAAGCCGTTAAGAAGCTAGCAAAACAGAGAATCGGACAGAATTCTGAAACCATCGAGAACATTATAGACCTCTTAAGCAAATTCAAACAGATATTACGTCTTGATGATGCTACTTCGCTTGATGGGCTGGTTTCTGTAAAGTGTTTGCAACGATGTCAGTCTTCATTAATCCCTAATGAATTCCTCTGCCCTATTAAGCTTGAGATTATGACGGATCCCGTTATTGTAGCAACCGGGCAGGGAAAGCATCCAAAAGTGGATAGCTCGAACCATAGAACATGTCCAAAAACAGGACAGACCTTGGATCATTTTTCCATAGCACCAAATTACACTCACAAGAATTTAATTCAGCAGTGGTGTGAGAAGAACAATGTAGAGCTGCCTGAGAAGGAACCTTATAGTGGATCAGACACCTCATTTGCTGCACTCATTGAAGGAATCTCCACCTTAATAAAAAATATATCATCTTCTGACATGGATGTTCAAAGAGAAGCGATAATGAAGATCAGAATCCTCTCCAAGGAGAATCCTGAAAACAGAATCTTAATTGCTAGTAACGGAGGAATCCCTCCTTTAGTACATCTCCTGTCCAATCCAGAACCCAAGTTTCAAGAAAATACCGTGACGGCTTTATTAAACTTGTCGATTGATGAAGCGAATAAAAGACTCATAGCAAGAGAAGGAGCTATCCCTCACATTATCGAAATCTTACAAAACGGAATGGATGAAGCTAGAGAGAACTCTGCTGCTGCTCTTTGTAGCTTATCAATGCTCGATGAAAATAAAGAAAAAAAATCCCGAGCAACTGAGGCGGGGATTATTCTGCCTTTACTTCATTTGCTGGAAAATAAGAACTTGGGAATGGTAGAGAAGCGTTGTCGATACTGTATTGTAAAAGACGGGTTGAATAAGAGTAAGGAATGTGCTGTTTTGCTACTGTTAGAGCTCGGATTGAATATTTCGTCTGTTGTTTTGGCTGCGCTTCAGTTTGGTATGTATGAAGATTTAGTAGAGGTGTCGAGGTCTGGATCAAATAGAGCGCTAAGGAAGGCGAATTCACTTTTGCAGTACATATACTGCGTTCCTTAA 1092 40.29 MEAVKKLAKQRIGQNSETIENIIDLLSKFKQILRLDDATSLDGLVSVKCLQRCQSSLIPNEFLCPIKLEIMTDPVIVATGQGKHPKVDSSNHRTCPKTGQTLDHFSIAPNYTHKNLIQQWCEKNNVELPEKEPYSGSDTSFAALIEGISTLIKNISSSDMDVQREAIMKIRILSKENPENRILIASNGGIPPLVHLLSNPEPKFQENTVTALLNLSIDEANKRLIAREGAIPHIIEILQNGMDEARENSAAALCSLSMLDENKEKKSRATEAGIILPLLHLLENKNLGMVEKRCRYCIVKDGLNKSKECAVLLLLELGLNISSVVLAALQFGMYEDLVEVSRSGSNRALRKANSLLQYIYCVP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10724588 10725885 + Conep08aG0136200.1 Cone8ag1323 443872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1323 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 124 IPR013083 -
Cone8ag1323 363 PANTHER U BOX DOMAIN-CONTAINING 297 359 - -
Cone8ag1323 363 SUPERFAMILY RING/U-box 58 129 - -
Cone8ag1323 363 Gene3D - 138 359 IPR011989 -
Cone8ag1323 363 Pfam U-box domain 58 124 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1323 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 188 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 SUPERFAMILY ARM repeat 146 292 IPR016024 -
Cone8ag1323 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 230 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 ProSiteProfiles U-box domain profile. 57 127 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1323 363 SMART Ubox_2 61 120 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag1323 363 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 Pfam Armadillo/beta-catenin-like repeat 177 216 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 SMART arm_5 137 175 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 SMART arm_5 218 258 IPR000225 GO:0005515(InterPro)
Cone8ag1323 363 SMART arm_5 177 217 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1323 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1323 Cone-Chr8:10724588 Cone5ag1750 Cone-Chr5:12453767 1.86E-16 dispersed
Cone8ag1323 Cone-Chr8:10724588 Cone12ag1269 Cone-Chr12:9729543 5.46E-147 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g278 . Blo15g00428 Bda06g00438 . . . . . . . . Cma20g00717 . Car20g00618 . . . . . . . . . . . . . . . . . Cone12ag1269 Cone8ag1323 . . Lsi10g00826 . . . . . . . . . . . . . Cmo20g00715 . . . . Cpe16g00348 . . . . . . . . . . . . . . . . . . Cme11g01284
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36