Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1325 ATGGATGGGGATGGCGATTCTTCCAAGCCCAAAGTTGGTAGTGGTGGTGAGGAGGGGATAGTGATTAACATCCGGTGCTCGAACAGCTCGAAATTTACGGTGAGGACGAAGCCTGATTCGACGGTTGGGGCGTTCAAAGCAATTCTGGCTCAGAATTGTGATGTTCCAGCTGAGCAGCAGCGCTTGATCTACAAAGGTCGCATCTTGAAGGACGACCAGACCCTTGAAAGTTATGGTTCGATGGCAGATCACACTATTCACATGGTCCGTGGCTCTGCTCCACCTGCGTCAGCACCAGCTCCTCCTACTACCACCACTGCAAATAGTGGTAATCCTAACACCTCCACTACCAATGAAGGAGGAGCTTTTGGAAATGCTGGTCTTGGTACCTCTTTATTTCCAGGACTCGGTTTCAATCCGCTTGGTGGAGGAGGTGGAGCATCTGGTCTATTCGGAGCTGGACTACCAGAATTGGAACAAATGCAGCATCAAATGTCCCAAAACCCAAACATGATGAGGGATATAATGAACATGCCTGCTTTTCAGAACTTGATGAACAACCCTGAATTGATGCGAACTTTGATTACGAGCAATCCTCAAATGCAAGAGATCATGGATAGGAACCCTGAGCTGTCTCATATACTTAATGACCCTCAAATTTTGCGACAGACATTTGAAGCGGCTAGGAACCCTGAGCTTATGCGTGAGATGATGAGGAACACTGATAGGGCGATGAGTAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTGAGACGTATGTATGAAAATGTCCAGGAGCCATTTTTGAATGCAACCACTATGGGTGGAAATGCTGGAAATGACTTGAACTCGAACCCATTTGCTGCTTTGTTGGGAAACCAAGGTGCAGCTCAGGCTGGGACTGGTGCTAACAACCCTTCAACTACTGGTTCTGACACAACTACAGGGCCTACTGCTCCAAATGCAAACCCACTTCCCAATCCTTGGGGCAACCCTAGTGGGGGAACACAGAACAACACAGCAAATGCAGGAGGTGATGTGAGGGCAGCTGGTATTGGTGGACTAGGAGGGACTGGACTCTTTGATATGGGGAACATGCTTGGTGGTGCGCCTGATGCTGCTTCATTCAATCAGGTTCTCCAAAATCCAGCTATATCACAGATGATGCAGAGTCTTCTCTCTAATCCCCAATATATGAATCAGATTCTAAGTCTCAACCCACAACTACGTGGCATGGTTGATATGAATCCCCGATTAAGAGAAATGATGCAAAATCCAGAACTTCTTCGCCAGTTAGCTAATCCTGAGACAATGCAGCAAATGCTAACATTGCAACAGTCACTCATGTCTCAGCTCAATCAGCATCAATCAACCCAAGAACCAGGTCAGACAGGTGTGCCTACAGGAACTCCCAATAATGCCGGGTTGGACTTACTGATGAACATGTTCAGTGGTCTCGGTGCTGGCGGACTTTCTGACAATTCCAATGTACCCCCAGAAGAACTATATGCTACCCAACTTTCTCAGCTTCAAGAAATGGGTTTCTTTGACGCCCAGGAAAACATCAGGGCCCTTCGAGCTACTTCCGGAAATGTCCATGCTGCGGTAGAGCGACTCTTGGGAAATCTTGGGCAGTAA 1641 47.47 MDGDGDSSKPKVGSGGEEGIVINIRCSNSSKFTVRTKPDSTVGAFKAILAQNCDVPAEQQRLIYKGRILKDDQTLESYGSMADHTIHMVRGSAPPASAPAPPTTTTANSGNPNTSTTNEGGAFGNAGLGTSLFPGLGFNPLGGGGGASGLFGAGLPELEQMQHQMSQNPNMMRDIMNMPAFQNLMNNPELMRTLITSNPQMQEIMDRNPELSHILNDPQILRQTFEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNAGNDLNSNPFAALLGNQGAAQAGTGANNPSTTGSDTTTGPTAPNANPLPNPWGNPSGGTQNNTANAGGDVRAAGIGGLGGTGLFDMGNMLGGAPDAASFNQVLQNPAISQMMQSLLSNPQYMNQILSLNPQLRGMVDMNPRLREMMQNPELLRQLANPETMQQMLTLQQSLMSQLNQHQSTQEPGQTGVPTGTPNNAGLDLLMNMFSGLGAGGLSDNSNVPPEELYATQLSQLQEMGFFDAQENIRALRATSGNVHAAVERLLGNLGQ 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10728073 10731373 + Conep08aG0136400.1 Cone8ag1325 443874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1325 546 Pfam UBA/TS-N domain 504 540 IPR015940 -
Cone8ag1325 546 SUPERFAMILY Ubiquitin-like 14 108 IPR029071 -
Cone8ag1325 546 CDD Ubl_Dsk2p_like 20 91 - -
Cone8ag1325 546 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Cone8ag1325 546 PANTHER UBIQUILIN 17 542 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Cone8ag1325 546 MobiDBLite consensus disorder prediction 329 345 - -
Cone8ag1325 546 FunFam Ubiquitin domain-containing protein DSK2b 487 545 - -
Cone8ag1325 546 SMART ubq_7 20 91 IPR000626 GO:0005515(InterPro)
Cone8ag1325 546 SUPERFAMILY UBA-like 500 542 IPR009060 GO:0005515(InterPro)
Cone8ag1325 546 SMART uba_6 504 542 IPR015940 -
Cone8ag1325 546 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Cone8ag1325 546 MobiDBLite consensus disorder prediction 298 321 - -
Cone8ag1325 546 MobiDBLite consensus disorder prediction 102 123 - -
Cone8ag1325 546 Gene3D - 11 103 - -
Cone8ag1325 546 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515(InterPro)
Cone8ag1325 546 CDD UBA_PLICs 504 542 - -
Cone8ag1325 546 Pfam Ubiquitin family 22 90 IPR000626 GO:0005515(InterPro)
Cone8ag1325 546 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 499 543 IPR015940 -
Cone8ag1325 546 SMART CBM 198 237 IPR006636 -
Cone8ag1325 546 SMART CBM 371 403 IPR006636 -
Cone8ag1325 546 SMART CBM 407 442 IPR006636 -
Cone8ag1325 546 SMART CBM 144 194 IPR006636 -
Cone8ag1325 546 MobiDBLite consensus disorder prediction 92 123 - -
Cone8ag1325 546 Gene3D - 193 251 - -
Cone8ag1325 546 Gene3D - 491 545 - -
Cone8ag1325 546 MobiDBLite consensus disorder prediction 298 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1325 K04523 - - vvi:100267604 684.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1271 Cone-Chr12:9734072 Cone8ag1325 Cone-Chr8:10728073 2.96E-240 wgd
Cone12ag0861 Cone-Chr12:7716464 Cone8ag1325 Cone-Chr8:10728073 1.63E-140 wgd
Cone8ag0890 Cone-Chr8:8693574 Cone8ag1325 Cone-Chr8:10728073 4.24E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39