Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag1326 | ATGGAAACCAACTTCAACACCATCACAACCAGCACAAGTTCTGATCCCGATTACTCACTAGACTTCAACATTTCTACCACAACTTATACCTATTCTTCACCTTCTTCAGGCACAACTGCTCCGAAACACCCACAAGCCTCCCGTAAAAAGCGCTCCAAACCCCTTGGAATCAACAAGCATGCATCAACAAGTTCCAGCATCATTTCCAAGCCCAAGTATTGCAGCAAGAAACCGGACCCCACTGCACCGAAAATCACCGAGCCGTGCAGTGAATGTGGTAAGAAGTTCTGGTCGTGGAAGGCTCTTTTTGGGCACATGAGATGTCACCCAGAACGGCAATGGCGTGGAATCAACCCCCCTCTGAACTTCCAACAGCCCATTAGTCCCCAGGCTAGGCCTGTAAATAATGATCCGTTCGAAGTATCAATGACAAAAGATGATCATGAAGTTGCAACTTGGTTGATAATGCTGGCCAATGGGCCTAGAGAAGACGAAAGGACAACGTTTGAGGACTTAACCGGTGGTGCGGACCCGTCATGTCGGTTTGAGTGCTTGGGTTGCAAGAAGGTGTTTGGGTCACACCAGGCATTGGGAGGACATAGGGCCAGTCACAAAAATGTGAAGGGCTGTTTTGCCATGATGAGGAGTGATGATCTTGATCATGATCAAAATGCTGATCAAAGTGATCAGAGGGATGACAGTAACAACAGCAGAATGGAGGAGAAGATGGTGAATATGGGGTTAGGATTGGGGCACAAGTGTAATGTTTGTATGAGGGTTTTTTCAAGTGGTCAAGCTTTGGGTGGGCATATGAGGTGCCATTGGGAAAAAGTAGAGGAGCCAATTGGTATTGAAGGAAGGAAGGATGAGGTATACGGTGGCGTTTTGGACTTGAATTTACCTGCACCTGTTGAAGATGAGTCTGAGTCTTCTTACTCTTCTGAGCTTACTTTGGATCTTAGACTGGGTCTTTGA | 975 | 46.77 | METNFNTITTSTSSDPDYSLDFNISTTTYTYSSPSSGTTAPKHPQASRKKRSKPLGINKHASTSSSIISKPKYCSKKPDPTAPKITEPCSECGKKFWSWKALFGHMRCHPERQWRGINPPLNFQQPISPQARPVNNDPFEVSMTKDDHEVATWLIMLANGPREDERTTFEDLTGGADPSCRFECLGCKKVFGSHQALGGHRASHKNVKGCFAMMRSDDLDHDQNADQSDQRDDSNNSRMEEKMVNMGLGLGHKCNVCMRVFSSGQALGGHMRCHWEKVEEPIGIEGRKDEVYGGVLDLNLPAPVEDESESSYSSELTLDLRLGL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10731700 | 10732674 | + | Conep08aG0136500.1 | Cone8ag1326 | 443875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag1326 | 324 | Pfam | C2H2-type zinc finger | 181 | 205 | IPR013087 | - | |
Cone8ag1326 | 324 | Pfam | C2H2-type zinc finger | 89 | 111 | IPR013087 | - | |
Cone8ag1326 | 324 | Pfam | C2H2-type zinc finger | 252 | 276 | IPR013087 | - | |
Cone8ag1326 | 324 | SUPERFAMILY | beta-beta-alpha zinc fingers | 88 | 204 | IPR036236 | - | |
Cone8ag1326 | 324 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 25 | 322 | - | - | |
Cone8ag1326 | 324 | Gene3D | Classic Zinc Finger | 179 | 274 | - | - | |
Cone8ag1326 | 324 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Cone8ag1326 | 324 | MobiDBLite | consensus disorder prediction | 29 | 43 | - | - | |
Cone8ag1326 | 324 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 254 | 274 | IPR013087 | - | |
Cone8ag1326 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 182 | 209 | IPR013087 | - | |
Cone8ag1326 | 324 | MobiDBLite | consensus disorder prediction | 57 | 71 | - | - | |
Cone8ag1326 | 324 | SUPERFAMILY | beta-beta-alpha zinc fingers | 252 | 277 | IPR036236 | - | |
Cone8ag1326 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 252 | 274 | IPR013087 | - | |
Cone8ag1326 | 324 | SMART | c2h2final6 | 252 | 274 | IPR013087 | - | |
Cone8ag1326 | 324 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Cone8ag1326 | 324 | SMART | c2h2final6 | 182 | 204 | IPR013087 | - | |
Cone8ag1326 | 324 | MobiDBLite | consensus disorder prediction | 29 | 85 | - | - | |
Cone8ag1326 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 87 | 114 | IPR013087 | - | |
Cone8ag1326 | 324 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 184 | 204 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag0576 | Cone-Chr11:3314572 | Cone8ag1326 | Cone-Chr8:10731700 | 2.06E-23 | dispersed | |
Cone14ag0519 | Cone-Chr14:2600422 | Cone8ag1326 | Cone-Chr8:10731700 | 4.27E-26 | dispersed | |
Cone15ag0546 | Cone-Chr15:2715548 | Cone8ag1326 | Cone-Chr8:10731700 | 4.17E-27 | dispersed | |
Cone7ag1343 | Cone-Chr7:9773254 | Cone8ag1326 | Cone-Chr8:10731700 | 8.96E-11 | dispersed | |
Cone8ag1326 | Cone-Chr8:10731700 | Cone12ag0386 | Cone-Chr12:2224692 | 2.10E-06 | dispersed | |
Cone6ag1699 | Cone-Chr6:12834417 | Cone8ag1326 | Cone-Chr8:10731700 | 1.07E-08 | transposed | |
Cone12ag1272 | Cone-Chr12:9737824 | Cone8ag1326 | Cone-Chr8:10731700 | 1.53E-190 | wgd | |
Cone3ag1243 | Cone-Chr3:31221835 | Cone8ag1326 | Cone-Chr8:10731700 | 2.46E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46726 | PF01167 | Tub | 8.20E-114 | CL0395 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag1326 | - | - | - | 0.0 |