Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1326 ATGGAAACCAACTTCAACACCATCACAACCAGCACAAGTTCTGATCCCGATTACTCACTAGACTTCAACATTTCTACCACAACTTATACCTATTCTTCACCTTCTTCAGGCACAACTGCTCCGAAACACCCACAAGCCTCCCGTAAAAAGCGCTCCAAACCCCTTGGAATCAACAAGCATGCATCAACAAGTTCCAGCATCATTTCCAAGCCCAAGTATTGCAGCAAGAAACCGGACCCCACTGCACCGAAAATCACCGAGCCGTGCAGTGAATGTGGTAAGAAGTTCTGGTCGTGGAAGGCTCTTTTTGGGCACATGAGATGTCACCCAGAACGGCAATGGCGTGGAATCAACCCCCCTCTGAACTTCCAACAGCCCATTAGTCCCCAGGCTAGGCCTGTAAATAATGATCCGTTCGAAGTATCAATGACAAAAGATGATCATGAAGTTGCAACTTGGTTGATAATGCTGGCCAATGGGCCTAGAGAAGACGAAAGGACAACGTTTGAGGACTTAACCGGTGGTGCGGACCCGTCATGTCGGTTTGAGTGCTTGGGTTGCAAGAAGGTGTTTGGGTCACACCAGGCATTGGGAGGACATAGGGCCAGTCACAAAAATGTGAAGGGCTGTTTTGCCATGATGAGGAGTGATGATCTTGATCATGATCAAAATGCTGATCAAAGTGATCAGAGGGATGACAGTAACAACAGCAGAATGGAGGAGAAGATGGTGAATATGGGGTTAGGATTGGGGCACAAGTGTAATGTTTGTATGAGGGTTTTTTCAAGTGGTCAAGCTTTGGGTGGGCATATGAGGTGCCATTGGGAAAAAGTAGAGGAGCCAATTGGTATTGAAGGAAGGAAGGATGAGGTATACGGTGGCGTTTTGGACTTGAATTTACCTGCACCTGTTGAAGATGAGTCTGAGTCTTCTTACTCTTCTGAGCTTACTTTGGATCTTAGACTGGGTCTTTGA 975 46.77 METNFNTITTSTSSDPDYSLDFNISTTTYTYSSPSSGTTAPKHPQASRKKRSKPLGINKHASTSSSIISKPKYCSKKPDPTAPKITEPCSECGKKFWSWKALFGHMRCHPERQWRGINPPLNFQQPISPQARPVNNDPFEVSMTKDDHEVATWLIMLANGPREDERTTFEDLTGGADPSCRFECLGCKKVFGSHQALGGHRASHKNVKGCFAMMRSDDLDHDQNADQSDQRDDSNNSRMEEKMVNMGLGLGHKCNVCMRVFSSGQALGGHMRCHWEKVEEPIGIEGRKDEVYGGVLDLNLPAPVEDESESSYSSELTLDLRLGL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10731700 10732674 + Conep08aG0136500.1 Cone8ag1326 443875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1326 324 Pfam C2H2-type zinc finger 181 205 IPR013087 -
Cone8ag1326 324 Pfam C2H2-type zinc finger 89 111 IPR013087 -
Cone8ag1326 324 Pfam C2H2-type zinc finger 252 276 IPR013087 -
Cone8ag1326 324 SUPERFAMILY beta-beta-alpha zinc fingers 88 204 IPR036236 -
Cone8ag1326 324 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 25 322 - -
Cone8ag1326 324 Gene3D Classic Zinc Finger 179 274 - -
Cone8ag1326 324 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Cone8ag1326 324 MobiDBLite consensus disorder prediction 29 43 - -
Cone8ag1326 324 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Cone8ag1326 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Cone8ag1326 324 MobiDBLite consensus disorder prediction 57 71 - -
Cone8ag1326 324 SUPERFAMILY beta-beta-alpha zinc fingers 252 277 IPR036236 -
Cone8ag1326 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 274 IPR013087 -
Cone8ag1326 324 SMART c2h2final6 252 274 IPR013087 -
Cone8ag1326 324 SMART c2h2final6 87 109 IPR013087 -
Cone8ag1326 324 SMART c2h2final6 182 204 IPR013087 -
Cone8ag1326 324 MobiDBLite consensus disorder prediction 29 85 - -
Cone8ag1326 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Cone8ag1326 324 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0576 Cone-Chr11:3314572 Cone8ag1326 Cone-Chr8:10731700 2.06E-23 dispersed
Cone14ag0519 Cone-Chr14:2600422 Cone8ag1326 Cone-Chr8:10731700 4.27E-26 dispersed
Cone15ag0546 Cone-Chr15:2715548 Cone8ag1326 Cone-Chr8:10731700 4.17E-27 dispersed
Cone7ag1343 Cone-Chr7:9773254 Cone8ag1326 Cone-Chr8:10731700 8.96E-11 dispersed
Cone8ag1326 Cone-Chr8:10731700 Cone12ag0386 Cone-Chr12:2224692 2.10E-06 dispersed
Cone6ag1699 Cone-Chr6:12834417 Cone8ag1326 Cone-Chr8:10731700 1.07E-08 transposed
Cone12ag1272 Cone-Chr12:9737824 Cone8ag1326 Cone-Chr8:10731700 1.53E-190 wgd
Cone3ag1243 Cone-Chr3:31221835 Cone8ag1326 Cone-Chr8:10731700 2.46E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46726 PF01167 Tub 8.20E-114 CL0395 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1326 - - - 0.0