Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1327 ATGGAATACGGCGGCGTGTTTACGACAACATCTACGACTCCGATATTTGACAGCATACCGTCGGCGGAGCATATCCACACGGTGGAAATGATGGATCATCCTCAAGCGGGGTTGGATTTCATGGAGGAACTACTTTCAGAAGGGTGCTGGTTGGAAGCAACGGGTGGGATGATCAACTCGCAAAACAATAACGTCCATAGTTTGCTTTCTTCTGATCATTACCCTAATTACACTGCCCACCATCTAAATTACATCCTAAACCCACATCACCAAATCTACCAAGAAGATCATCATCATAATCAGGGACTGATTTTCCAGGAAATTCAATCATCAGATCAGAATTTTGTCGTGGAACAAACAGGTGTATGTAGAAGATGGTGGATATCACCTAGAGCATATCCAACCCCTTGTTCGTCCGTGAAAGAGAGATTAATCCTCGCAATTGGCTGCTTAAAGGAGTGTACTAAGGATATTCATGATGATCACGTAAGAGACGTTCACATTCAAATCTGGGTTCCTGTTAAATCAAAAGCTGGAGCTGGATCAGGGTCAGGATCAAGAAGGGCGATCAATAGTAATTCTTCTAATAGTAGTAATAGTAGTGGTAGTGATTATCAGTTTGGAGCTCAGGATTGGCAAGACTACTTTCTGGGTTTGCATGGAAGGGCAGGCCATGTCTTAACGAAGCTGCCAGATTGGACAACTGCTGAGGTCCGATTTTGGAGAAGAGATGAGTACTACAACAATAGTACACGTCATCATCATGTACGAGGTGGTAATTCATGTCTTGCTGTTCCTGTTTTTGAACGAGATAGTGGGGTTTGTTTGGGTGTTGTTGAGATTTTCATGGCTACTATAACTACTACTGCAAGAACAAGCAACAACTATCGACCCGACCTCGAATACATTAGCGAAGCTCTTGAGTCCGTTGATCTCAGGAGCTTTCAGAACTGCAGTCCTCCCAGTGTTAAGCCTTGCACTGCTGACGAGCTCTACCAAGCTGCATTATCCGAAATAATCGAGGTCCTTACATCTGTCTGCAAAACACATCGACTACCTTTAGCCATAACGTGGGCCCCATGTGCCCAACAAGGCAAAGCCATCTGCCGGAATTCTGACGATCACCAAAACTATCTCTGCTGCATCTCCACCATTGAGTCCGCTTACTACATTGCAGATCTCGAGATACTCAGTTTCCTTGAGGCTTGCAATGAGCACCACTTGCTTCCAGGCCAAGGAATTGTTGGAACAGCTTTTAGTACCAACAAACCATGTTTTGCCGTAGATATTACTGCCTTTAGCAAAAACGAGTACCCTCTTTCTCACCATGCTCGGGTTTTTGGTTTACAAACAGCCGTAGCAATTCCTCTTCGTAGCGTCTACACCGGATTGGCCGATTTCATGTTGGAATTTTTCTTACCAAAAGATTGCGTCGAAAACGAGGAACAAAAGCGGATGTTGAATTCACTGTCAATAGCTATACAACAGAGTTGTAGAAGCTTGCATTTTGTACTGGAGAAAGACCAATTAGAGGAAGAAGCATTGATGCCACCAAATGGGCCACCCAGTAAAGAAGAAACTCAAAAACTCTCAAGTTCAGCTAATCCTCTAGATGAGTCTGGTTTGAAGGAGTCTTCTTGGATTGCTCACATGATGGAAGCACAGCAGAAAGGAAAAGGGATCTCTGTGTCGTTGGAATATCAGACAGAACCAAGGGAAGAGTTTAAGGTGACAACCCATTGGGATAACATTCAAGGAGGATCATTATTACCACCCAATGGGCAAGTTTTTTCAGCCTTCAATGGACAGCTTCAACAAAGCTCAGGGCCTAAAGTTAGTGTTGAAGGTGGTGGAGAATCCGATTCTTTTGCCGGGCGCCGCCCATCTGGTGGCAGAAAACCAGGCGAGAAGAGGCGGACCAAGGCAGAGAAGACTATAAGCTTGCCGGTTCTTAGACAATACTTTGCCGGAAGTCTTAAAGATGCTGCTAAGAGTATTGGTGTTTGCCCAACCACTCTAAAGAGAATATGCAGGCAACATGGTATAAACCGGTGGCCTTCTAGAAAGATCAAGAAAGTGGGCCACTCTTTAAGGAAACTCCAACTCGTGATCGACTCGGTACATGGTACAGAGGGAGCTATTCAAATCGGGTCGTTTTACAAAAGCTTCCCAGAATTGAGCTCCCCTAATTTCGGTGGGACCGAGGGCTTTCCATCATTGACCATGCATGATCATCATCAAGGACAGCAGTTGCACCATCAAGCTGAAAGCGGCTTATTTAGCCATGGGGCCCCTTCAAAGTCCCCCACTTCTTCTTGCAGTCAGACTTCCGGTCCAGCTGGTGTAAAGCAACATACAACAACAACAACCCCTATAACCGCCTTGGGCCGAGGGGATGTTTTAATAATGGCAGAAGACCCAGTTGGAGTTTTGCATAGAGTTTGCAGTGAAGCAGAGTTTCATGCCTTAAACCAAGATGACCCAAACAATCTAAGATCACAAAGCCCGCCATATGGCCCAGGAGGAGGAGATGCTTTAAGAGTTAAAGCAACACTTGGTGAAGAAAAGATCCGGTTCAGCTTGCAACCAAATTGGCATTTTAGAGATCTGCAACTTGAAATTGCCAGGCGGTTCAATGTAGATGATATTAGTAGAATCCTTGTGAGGTATGTGGATGATGATGGTGAATTAGTTCTTCTAACATGTGATACGGATCTCGAGGAGTGTAAGCAGATATACCTATCATCATCTCAGAGCCACACGATTAGACTTTCTCTTCAGTGGGCCAGTCACCAGAATCTGGGAAGCTCGTTCCGAAGTAGCAGCCCCTCCTAA 2835 45.04 MEYGGVFTTTSTTPIFDSIPSAEHIHTVEMMDHPQAGLDFMEELLSEGCWLEATGGMINSQNNNVHSLLSSDHYPNYTAHHLNYILNPHHQIYQEDHHHNQGLIFQEIQSSDQNFVVEQTGVCRRWWISPRAYPTPCSSVKERLILAIGCLKECTKDIHDDHVRDVHIQIWVPVKSKAGAGSGSGSRRAINSNSSNSSNSSGSDYQFGAQDWQDYFLGLHGRAGHVLTKLPDWTTAEVRFWRRDEYYNNSTRHHHVRGGNSCLAVPVFERDSGVCLGVVEIFMATITTTARTSNNYRPDLEYISEALESVDLRSFQNCSPPSVKPCTADELYQAALSEIIEVLTSVCKTHRLPLAITWAPCAQQGKAICRNSDDHQNYLCCISTIESAYYIADLEILSFLEACNEHHLLPGQGIVGTAFSTNKPCFAVDITAFSKNEYPLSHHARVFGLQTAVAIPLRSVYTGLADFMLEFFLPKDCVENEEQKRMLNSLSIAIQQSCRSLHFVLEKDQLEEEALMPPNGPPSKEETQKLSSSANPLDESGLKESSWIAHMMEAQQKGKGISVSLEYQTEPREEFKVTTHWDNIQGGSLLPPNGQVFSAFNGQLQQSSGPKVSVEGGGESDSFAGRRPSGGRKPGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKVGHSLRKLQLVIDSVHGTEGAIQIGSFYKSFPELSSPNFGGTEGFPSLTMHDHHQGQQLHHQAESGLFSHGAPSKSPTSSCSQTSGPAGVKQHTTTTTPITALGRGDVLIMAEDPVGVLHRVCSEAEFHALNQDDPNNLRSQSPPYGPGGGDALRVKATLGEEKIRFSLQPNWHFRDLQLEIARRFNVDDISRILVRYVDDDGELVLLTCDTDLEECKQIYLSSSQSHTIRLSLQWASHQNLGSSFRSSSPS 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10741156 10744824 + Conep08aG0136600.1 Cone8ag1327 443876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1327 944 ProSiteProfiles RWP-RK domain profile. 632 713 IPR003035 -
Cone8ag1327 944 Gene3D - 845 928 - -
Cone8ag1327 944 SMART PB1_new 845 929 IPR000270 GO:0005515(InterPro)
Cone8ag1327 944 Pfam PB1 domain 846 927 IPR000270 GO:0005515(InterPro)
Cone8ag1327 944 Pfam NLP protein GAF domain 328 502 IPR055081 -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 177 203 - -
Cone8ag1327 944 Pfam RWP-RK domain 646 693 IPR003035 -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 524 540 - -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 752 790 - -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 185 203 - -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 743 790 - -
Cone8ag1327 944 ProSiteProfiles PB1 domain profile. 845 929 IPR053793 -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 514 541 - -
Cone8ag1327 944 CDD PB1_NLP 846 927 IPR034891 -
Cone8ag1327 944 MobiDBLite consensus disorder prediction 604 642 - -
Cone8ag1327 944 SUPERFAMILY CAD & PB1 domains 838 931 - -
Cone8ag1327 944 PANTHER PROTEIN NLP8 114 941 IPR045012 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0870 Cone-Chr6:4444310 Cone8ag1327 Cone-Chr8:10741156 5.82E-38 dispersed
Cone8ag1327 Cone-Chr8:10741156 Cone9ag0876 Cone-Chr9:4266120 3.12E-96 dispersed
Cone12ag1273 Cone-Chr12:9744882 Cone8ag1327 Cone-Chr8:10741156 0 wgd
Cone20ag0023 Cone-Chr20:143717 Cone8ag1327 Cone-Chr8:10741156 3.87E-91 wgd
Cone3ag1247 Cone-Chr3:31282019 Cone8ag1327 Cone-Chr8:10741156 2.89E-268 wgd
Cone4ag2020 Cone-Chr4:14057012 Cone8ag1327 Cone-Chr8:10741156 1.60E-162 wgd
Cone7ag1936 Cone-Chr7:12353709 Cone8ag1327 Cone-Chr8:10741156 7.54E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1273 Cone8ag1327 Cone3ag1247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023717 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46727 PF05633 BPS1 6.10E-146 CL0133 Cone TF