Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1333 ATGGCGTCGGCGCCCAGTCCAGCGCCGAATGTGGATCTATTCGATGCGTATTTCCGGCGAGCAGATTTAGATCACGATGGCCGTATTAGTGGCCCTGAAGCGGTCGCGTTCTTTCAAGGCTCGGGATTGACGACACAGGTCCTTGCACAGATATGGGCACTTGCAGACCAGAGGCAAAGTGGTTTCCTTGGTCGGGCTGAGTTTTATAATGCCCTTAAACTGATTACTGTGGCACAAAGTAAGCGAGAATTAACCCCTGAAATGGTAAAAGCCGCATTGTATGGTCCAGCTGCAGCTAAAATACCAGCACCACAAATAAATATTTCTGCTATCCCTCCTTCTCAGCTCACTTCTGCTGCAGCAGCACCTGCCCCTCAAAGCAGTGGCATTCCAACATCCTCTCAGAACCTTGGCTTGAGGGGACCACAAGTTTCTCCAAATCTCAGTAATAATCACCAACAGGCTACTCAACAAATTCTATCATTAAGACCTCCTCAAGTAACGTCTACTGCTACTGCCCGTCCCATGCCAGGTTTTGCCACACCGGGATTTTCTGGGGCTGGCAATGCGGCAGGGTGGCCCCCATCAAACCCAAGCTTCTCAAATGATTGGGTGAGGGCCAATGTTGCTGGTGTTCAGACAACATCCTCACAAGCTCCTAATCCTGGAATTGCTCCCCCAACAACTCAGGTTGGATTTGGACCAACAACATCTGTATCAATGGCAACAATACCTCCTCGACCCCAGGCTGCTTCTGGGATGCAGCCATCTGGATCACCCCAAACACCCGACCTCGGAATTAGTCCGTCCCCAAATCAGGTTGGATTTGAACTGGCAACATCAGGGCCCACAGCTTTGCTACCTTCTCGTCCTCAGGCAGCTTCTGGGATACAGACATCTGGACCACCAGCTAAGGGATTTAAACCTATGGGAATTACTGGCAATGGGATTGCTTCTGATTCATTTTTTGGAGGAGATGTATTTTCTGCAACCCCATCTTCAGCAAAAAAAGATTCTTCCTCAAGTGCAGTTTCTGCACGGAGTGTAACAACCTCACCAGCCATTGTTCCAGTACCTTCTGGAACTCAGTTTTCACTTGGGCCAGGGGTACCTGATTCTTCACGGGGTTCTTTCCCAGGGCAACCTGTTGGTGGTCAGCTCCCGAATGCCCAGTCACTATTGAAGCCTAATCAACAGGTCTTGACTCCACCGACTTCATCTGGATCACAGAATCCTGTTTCCAGTCAGTCCCAGCAGCCATGGCCTAAGATGCCACAGACTGATGTCCAGAAGTATACCAAAGTATTTATAGAAGTAGACAAAGATAGAGATGGAAAAATAACTGGTGAAGAGGCACGAAACTTGTTTCTGAGTTGGAGATTACCTAGAGAGGTTTTGAAGCAGGTGTGGGACTTATCTGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTGTTGCATTATATTTGATGGAGCGGTATAGGGAAGGGCGTCCTCTTCCCTCAGTGCTCCCAAGTAACATTATCTTTGAATTACCCAGCTCTGGTCAACCTGTAATGAACTATCACAATGCAGCTTGGAGGCCTACAACTGGTTTCCAACAACCGCGAGGTGTGTCTGTGGCTCCTGCGCTGCATGCAGGAAATGTAGCAGCTAGGCCTCCAAAGCCACCGGGTGCCCCTAAGACTGATGATGGATTGCGGACCACCCAGCAGAAATCAAAGGTGCCAATCCTGGAGAAACACCTTGTAGATCAACTCAGTACTGAGGAGCAGAACTTGCTTAACTCAAAATTCCAAGAAGCAACAGAGGCTGCAAAAAAGGTTGAAGAATTGGAGAAAGAAATTGTAGACTCTAGAGCGAAAATAGAATATTGCCAGACGAAAATGCAGGAACTTGTCCTTTACAAGAGCAGATGTGACAATCGCCTTAATGAGATCACAGAAAGGGTATCTGCTGATAAGCGTGAGGTCGAGTCTCTTGCCAAGAAATATGAAGAGAAATGCAAACAACTTGGAGATGTGGCCTCCAGGTTGACACTTGAAGAATCAACATTCCATGACCTACAGGAGAAGAAGATGGAGCTGTATAAGGCGATTGTGAAGATGGAAAATGGTGGTGCTGATAATACTTTACAGGAGCGAGCTGATCAAATTCAGTCAGACCTTGATGAGGTAGTCAAAGCTCTCAATGAGCGTTGCAAGAGCTATGGTTTACGTTGTAAACCAACAACTGTTACAGAACTTCCTTTCGGTTGGCAACCTTGTATCCAAGAGGGAGCTGCTGACTGGGATGAAAACTGGGATAAGTTTGAGGAAGAAGGATTCACTCTTGTCAAGGAGCTTACTCTTGATGTGCATAATGTCCTGGCACCTCCAAAGGAGAAATCTAAAGTAGTTCAGAACGAAACAGTTGAAAGTCCTACAATTGCATCTTCTCCTAATGGTGATGTTAAGGGAGAGAAACTTTATACTGTTGATGGCTCAGCTATTGAAAATGGATCAGCAAACAATAATAAAACTGAAGATGGGTCAGAAAAAAGTGCTCCGAGCAGTCCAGTTGCGGGTAGTGGAATGGAAAGTCGAACAAAAAGTTCTCCAAGCAGTCCTGCAGCGAGTAGTATTATGGGAAGTCCTAAGGATTTATTCGGTTCTAACTTTGGAATTGGTGCTGGTTTTGATGCTTCTCCCCGCGACAAAGAAACCCAAAGTGAGCATGGAGGTGGAGGGTCTATATTTTCTGGTGACAGGGGTTTTGATGAGCCAAATTGGGGAATATCCGACGCCAATGACGATGTTGACTCTGTGTGGGGATTTAATGCAAGTAGTACCATCAAGGAACTGGATCATGAGAGAAATAGTGACAATTATTTCTTCGGTTCTGAGGAGCTTGGCCTAAATCCTATCAGGACAGGTTCACCGCATGGCAGTAGTGGCTTGTTCCCCAAGAAAAGCACATTTTTTGACGACTCTGTTCCTAGCACCCCACTCTCTCTCTTCAGTACAGGCAACTCACCACGTGGGTTCAACAACCAAAGGTCAGAAAACACTTTTGACAGCTTCTCAAGGTTCGATTCTTTTAACATGAGCGATGGTGGACTTTTTGCTTCTAGAGAAACACCAAGGGAAGCATTTTCTCGATTTGATTCAATGCGAAGCAATAAAGATTTCGACACTGGCCATGGATTCTCATCGTTCGAGGACTCTGACCCTTTTGGGACTTCCGGACCATTTAAGACTTCTTCACTTACAAATCAAACTCCAAGAAGCGGGTCGGAAAATAATTGGAGTGCATTTTAA 3306 46.28 MASAPSPAPNVDLFDAYFRRADLDHDGRISGPEAVAFFQGSGLTTQVLAQIWALADQRQSGFLGRAEFYNALKLITVAQSKRELTPEMVKAALYGPAAAKIPAPQINISAIPPSQLTSAAAAPAPQSSGIPTSSQNLGLRGPQVSPNLSNNHQQATQQILSLRPPQVTSTATARPMPGFATPGFSGAGNAAGWPPSNPSFSNDWVRANVAGVQTTSSQAPNPGIAPPTTQVGFGPTTSVSMATIPPRPQAASGMQPSGSPQTPDLGISPSPNQVGFELATSGPTALLPSRPQAASGIQTSGPPAKGFKPMGITGNGIASDSFFGGDVFSATPSSAKKDSSSSAVSARSVTTSPAIVPVPSGTQFSLGPGVPDSSRGSFPGQPVGGQLPNAQSLLKPNQQVLTPPTSSGSQNPVSSQSQQPWPKMPQTDVQKYTKVFIEVDKDRDGKITGEEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCVALYLMERYREGRPLPSVLPSNIIFELPSSGQPVMNYHNAAWRPTTGFQQPRGVSVAPALHAGNVAARPPKPPGAPKTDDGLRTTQQKSKVPILEKHLVDQLSTEEQNLLNSKFQEATEAAKKVEELEKEIVDSRAKIEYCQTKMQELVLYKSRCDNRLNEITERVSADKREVESLAKKYEEKCKQLGDVASRLTLEESTFHDLQEKKMELYKAIVKMENGGADNTLQERADQIQSDLDEVVKALNERCKSYGLRCKPTTVTELPFGWQPCIQEGAADWDENWDKFEEEGFTLVKELTLDVHNVLAPPKEKSKVVQNETVESPTIASSPNGDVKGEKLYTVDGSAIENGSANNNKTEDGSEKSAPSSPVAGSGMESRTKSSPSSPAASSIMGSPKDLFGSNFGIGAGFDASPRDKETQSEHGGGGSIFSGDRGFDEPNWGISDANDDVDSVWGFNASSTIKELDHERNSDNYFFGSEELGLNPIRTGSPHGSSGLFPKKSTFFDDSVPSTPLSLFSTGNSPRGFNNQRSENTFDSFSRFDSFNMSDGGLFASRETPREAFSRFDSMRSNKDFDTGHGFSSFEDSDPFGTSGPFKTSSLTNQTPRSGSENNWSAF 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10758146 10764511 + Conep08aG0137200.1 Cone8ag1333 443882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1333 1101 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 SUPERFAMILY EF-hand 418 511 IPR011992 -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 247 312 - -
Cone8ag1333 1101 Pfam Cytoskeletal-regulatory complex EF hand 422 495 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 CDD EH 432 498 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 Gene3D - 405 511 - -
Cone8ag1333 1101 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 331 359 - -
Cone8ag1333 1101 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 ProSiteProfiles EF-hand calcium-binding domain profile. 464 496 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 Coils Coil 597 631 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 331 426 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 384 426 - -
Cone8ag1333 1101 SMART eh_3 421 516 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 SMART eh_3 2 98 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 1061 1101 - -
Cone8ag1333 1101 SUPERFAMILY EF-hand 10 89 IPR011992 -
Cone8ag1333 1101 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 SMART efh_1 47 75 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 SMART efh_1 465 493 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 SMART efh_1 431 459 IPR002048 GO:0005509(InterPro)
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 551 573 - -
Cone8ag1333 1101 Coils Coil 646 684 - -
Cone8ag1333 1101 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 Gene3D - 9 100 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 797 921 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 247 299 - -
Cone8ag1333 1101 PANTHER EH DOMAIN 246 1008 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 832 877 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 119 175 - -
Cone8ag1333 1101 ProSiteProfiles EH domain profile. 428 511 IPR000261 GO:0005515(InterPro)
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 1070 1101 - -
Cone8ag1333 1101 MobiDBLite consensus disorder prediction 119 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1298 Cone-Chr12:9866620 Cone8ag1333 Cone-Chr8:10758146 0 wgd
Cone17ag1459 Cone-Chr17:9898274 Cone8ag1333 Cone-Chr8:10758146 1.50E-208 wgd
Cone20ag0016 Cone-Chr20:121124 Cone8ag1333 Cone-Chr8:10758146 4.44E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41