Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1336 ATGGCTTCTGGGACAGATTACCCGCCTCTCTTATTCATCTTTGAAGCCAATTACCGGAAGAGAAATGTCATACACAACAGAAATGAAAAGCCGGACTCTCTTGAGAACCCAAAGCACATACACATAAGCAAACCTTCGAGGCAACTCTCAACAGTTTCGCACTACGTTAGCCCGGTTCAGTTAAATTCTACAATTGAATCGGAATTTGATATTGAGATGGTTACCGCAAAACCATCATCAGACTGTGACTCGAAATTTGAACCCGTTTTCCGATCGGGGAGTTGTTCTGAAATTGGGCCAAAGCCTTTTATGGAGGATGAGCATGTATGTATAGATAATCTTCTTGAGCATCTGGGTCCCACTGAACACTTCTCTTCTCCTGGCGCTTTCTATGGGGTATTTGATGGGCATGGTGGTGTAGATGCAGCTTCTTTTATTAGGCATAACATTTTGAGGTTTATAATCAAAGATACCCATTTCTCCGATTGTATGAAAGGGGCTATTAGAAGTGCTTTTCTGAAAGCCGATCAAGCATTTGAAGAAGTTTCTTCTCTAGATACTTCCTCTGGTACTACGGCACTAACTGCCCTTATTTGTGGAAGGAAAATGCTAATTGCCAATGTGGGGGACTGTAGAGCCGTGTTAGGGAAGAGAGGCAAGGCGATGGAGTTATCAAAGGACCACAAGCCAAACTGCAGTTCTGAAAGACTAAGGATTGAAAAACTAGGTGGTGTGGTATATGACGGTTACCTTAACGGGCGGTTATCAGTGTCACGGGCACTTGGAGATTGGCATATGAAAGGCCCAAAAGGCTCCTTCCCCTCCTCTTGTCCTTTAAGCGCTGAGCCTGAGGTCCAAGAGGTAGTGCTTGGCCCAGAAGACGAGTTCTTGATATTAGGTTGTGATGGGTTGTGGGATGTTATGAGCAGCCAGTTTGCAGTTACGATTGCTAGGAAGGAGTTGATGATTCATAACGATCCAGAGAGATGTGCTAGGGAGCTTGTTAGGGAGGCTATGAAGAGGAATTCGTGCGATAATTTGACGGTTATCGTCCTCTGTTTTTCTCCGGATCCTCCACCTCAGATTGGACAGTGA 1095 44.84 MASGTDYPPLLFIFEANYRKRNVIHNRNEKPDSLENPKHIHISKPSRQLSTVSHYVSPVQLNSTIESEFDIEMVTAKPSSDCDSKFEPVFRSGSCSEIGPKPFMEDEHVCIDNLLEHLGPTEHFSSPGAFYGVFDGHGGVDAASFIRHNILRFIIKDTHFSDCMKGAIRSAFLKADQAFEEVSSLDTSSGTTALTALICGRKMLIANVGDCRAVLGKRGKAMELSKDHKPNCSSERLRIEKLGGVVYDGYLNGRLSVSRALGDWHMKGPKGSFPSSCPLSAEPEVQEVVLGPEDEFLILGCDGLWDVMSSQFAVTIARKELMIHNDPERCARELVREAMKRNSCDNLTVIVLCFSPDPPPQIGQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10770928 10773666 - Conep08aG0137500.1 Cone8ag1336 443885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1336 364 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Cone8ag1336 364 Gene3D - 72 357 IPR036457 -
Cone8ag1336 364 FunFam Probable protein phosphatase 2C 22 75 357 - -
Cone8ag1336 364 SUPERFAMILY PP2C-like 85 355 IPR036457 -
Cone8ag1336 364 CDD PP2Cc 90 354 IPR001932 -
Cone8ag1336 364 ProSiteProfiles PPM-type phosphatase domain profile. 91 354 IPR001932 -
Cone8ag1336 364 PANTHER PROTEIN PHOSPHATASE 2C 76 354 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone8ag1336 364 SMART PP2C_4 81 352 IPR001932 -
Cone8ag1336 364 Pfam Protein phosphatase 2C 98 346 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0704 Cone-Chr15:3824156 Cone8ag1336 Cone-Chr8:10770928 7.36E-98 dispersed
Cone8ag1336 Cone-Chr8:10770928 Cone9ag0849 Cone-Chr9:4151370 1.01E-29 dispersed
Cone12ag1295 Cone-Chr12:9857607 Cone8ag1336 Cone-Chr8:10770928 1.62E-253 wgd
Cone4ag2028 Cone-Chr4:14086405 Cone8ag1336 Cone-Chr8:10770928 4.34E-23 wgd
Cone7ag1942 Cone-Chr7:12392172 Cone8ag1336 Cone-Chr8:10770928 7.63E-156 wgd
Cone8ag0907 Cone-Chr8:8797371 Cone8ag1336 Cone-Chr8:10770928 1.08E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1336 K14803 - mdm:103422184 530.406