Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1341 ATGGAGTACAGAAAGATCAAAGATGAGGATAAAGATGAGGATGGAGGTGGTAGTACTAGTGGTGGTGGCGGAGATATAGAGAGCTTACACGGTGGAAAATCAATTTCTGGCGTGAGTAATTTGGCTGCATTGGGAATGAATTCAACTCACCGATCCAAGTGGAAGCAAAAATCGTTTGTTACAATTGCATTGACTATTTTTACGAGTTCACAAGCAATTCTTATCGTGTGGTCCAAGAGAGCTGGGAAGTACGAGTACAGTGTTACAACTGCAAATTTTTTGGTGGAGGCTTTGAAGTGTGCCTTATCTCTTGCAGCACTGGGTAGAATTTGGAAAAACGAAGGTGTTACTGAAGACAACAGGTTGCGCACAACACTTGATGAAGTTAGTGTATATCCCATTCCAGCAGTACTTTACCTTGTCAAGAATTTGCTTCAGTATTACATCTTTGCTTATGTGGATGCCCCGGGATATCAAATACTGAAAAACCTGAATATTATCAGTACTGGTGTTCTGTACAGAATTATACTCAAGAGAAATTTAAGTGAGGTTCAATGGGCAGCATTCATTCTACTATGTGCAGGTTGCACCACAGCCCAACTAAAGTCAAATTCTGATGAGGTTCTTCAGACGCCTTTTCAAGGCTGGATGATGGCCATTGTCATGGCTCTCTTAAGTGGTTTTGCAGGAGTGTACACAGAGGCTATAATTAAAAAGCGGCCTTCACGGAATGTAAATGTTCAAAACTTTTGGTTGTATATATTTGGAATGGCGTTCAATGCTATTGCAATACTGACTCAAGATTTCGATGCAGTCATGAACAAGGGATTTTTCCATGGATATTCCTTCATAACAGTTCTTATGATTGTCAATCATGCACTCAGTGGCATTGCTGTATCTATGGTACTGAAGTATGCTGACAATATTGTGAAGGTCTACTCAACTTCAGTGGCAATGCTTCTCACTGCAGTTGTTTCTGTCTTTCTGTTTGGATTTCATCTTTCTCTTGCCTTCTTCCTTGGATCAACGGTAGTCTCTGTTTCGGTATATTTACACTCGATTGGAAAGCTGCCAAGGTAG 1080 40.65 MEYRKIKDEDKDEDGGGSTSGGGGDIESLHGGKSISGVSNLAALGMNSTHRSKWKQKSFVTIALTIFTSSQAILIVWSKRAGKYEYSVTTANFLVEALKCALSLAALGRIWKNEGVTEDNRLRTTLDEVSVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRNLSEVQWAAFILLCAGCTTAQLKSNSDEVLQTPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRNVNVQNFWLYIFGMAFNAIAILTQDFDAVMNKGFFHGYSFITVLMIVNHALSGIAVSMVLKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVSVYLHSIGKLPR 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10789216 10792722 + Conep08aG0138000.1 Cone8ag1341 443890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1341 359 PIRSF UDP-gal_transpt 36 357 IPR007271 GO:0000139(InterPro)|GO:0015165(InterPro)|GO:0016020(InterPro)|GO:0090481(InterPro)
Cone8ag1341 359 MobiDBLite consensus disorder prediction 1 31 - -
Cone8ag1341 359 Pfam Nucleotide-sugar transporter 57 352 IPR007271 GO:0000139(InterPro)|GO:0015165(InterPro)|GO:0016020(InterPro)|GO:0090481(InterPro)
Cone8ag1341 359 PANTHER NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER 50 354 IPR007271 GO:0000139(InterPro)|GO:0015165(InterPro)|GO:0016020(InterPro)|GO:0030173(PANTHER)|GO:0090481(InterPro)
Cone8ag1341 359 MobiDBLite consensus disorder prediction 1 16 - -
Cone8ag1341 359 NCBIfam solute carrier family 35 transporter 134 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1341 K15272 - - csv:101213027 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0405 Cone-Chr14:1876783 Cone8ag1341 Cone-Chr8:10789216 1.02E-66 dispersed
Cone15ag0444 Cone-Chr15:2077039 Cone8ag1341 Cone-Chr8:10789216 1.44E-68 dispersed
Cone18ag0888 Cone-Chr18:6270394 Cone8ag1341 Cone-Chr8:10789216 1.75E-32 dispersed
Cone8ag0221 Cone-Chr8:1214937 Cone8ag1341 Cone-Chr8:10789216 1.49E-13 dispersed
Cone12ag1289 Cone-Chr12:9835877 Cone8ag1341 Cone-Chr8:10789216 1.06E-235 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g305 . Blo15g00415 Bda06g00448 . . . . Bma12g00886 . . Cma02g00304 . Car02g00183 . . . . . . . . . . . . . . . . . . Cone12ag1289 Cone8ag1341 . . . . . . . . . . . . . . . Cmo02g00297 . . . . . . Cpe05g01334 . . . . . . . Cla02g01058 Cam02g1130 Cec02g1134 Cco02g1174 Clacu02g1118 Cmu02g1081 Cre02g1385 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008461 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 1 5 3 1 35