Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1349 ATGGCATTTCAGACTGAGTCCAATAATGTTGAAAACTCTGTTTCAGAGGTCAACAGGTCAAGGTTAGAGGATGAAATAGCAGAGAGAACAGCAGAATGGGGAGTGATAGTGAAGCAAGAAGAAGGGCAGAGTAGTTTTAAGGCCATAGTAGGTAACATGAAGAGAGACTCAGGTGAAGGGAATAGAAGTAAGAATTCATCGTCAGAGAGGTATGGAGGAGGACCCGGATCGACTAGAACGTCGGAAGAGTTGAATTCTGGTGGGGCCGACCCAAGTTCTTTTCCAAGAGTATCACAAGAGTTGAAAGATGCATTAGCAACTCTTCAACAGACTTTTGTTGTTTCTGATACCACAAAACCAGATTGTCCAATTGTTTATGCGAGCAGTGGATTCTTTAGCATGACTGGTTATTCCCCCAAAGATGTTATTGGAAGAAACTGCCGGTTTCTGCAGGGTGACGGGACGGACCGGAAAGAAGTGGAGAAGATCCGAGATGCGGTTAAAAACGGGAAAAGCTTCTGTGGTAGGCTTCTGAACTACAAGAAAGATGGGTCCCCTTTCTGGAATCTTCTTACCCTCACCCCTATTAAAGATGACAATGGAAAGACCATCAAATTCATTGGAATGCAAGTTGAGGTGAGTAAATACACAGAAGGAGTTAATGAGAAAGAATTGCGTCCAAACGGATTGCCTACCTCATTAATCCGATACGATGCTCGACAGAAGGAAACGGCAATTGGGTCCATTTCAGAGGTGGTTCAAACCGTAAAACATCCACAACCTCAAATCCAAACTGATCAAGAGACGGAAAAATTTGATCTCAATTATGTCCTGCCAAAATCTGTTCATGAAGCTCAAAATTTTACTACACCCGGCAGACAAACTCCACGATGGGACCCCACTGGTGATTTGTCATTTGAAGATCCCGGCAAAAAATTGAGACTGTCAAGCCGCATCTCCTTGATGGGGTTTAAGAGGAGGTCTTTAGGATCAGCAGTGAAACATGAACAGATCATTGAACCAGAAGTTTTGATGACAAAGGACGAAGAACGGTCAGACAGTTGGGATCGTTCGGAAAGAGAGAGGGATATTAGGCAAGGAATTGATTTAGCAACCACATTGGAACGTATTGAGAAAAACTTTGTGATTACTGATCCTAGATTACCTGATAATCCCATTATTTTCGCATCTGATAGCTTTCTTAAACTGACCGAATATACACGGGAAGAGATTTTGGGTAAAAATTGCAGGTTTCTTCAGGGGTCCGAGACAGATCAAGCAACTGTCTCGAGAATAAGAGATGCTATTAGACAACAAACAGAAATCACTGTCCAGTTGATCAACTATACTAAGAGTGGTAAGAAGTTCTGGAATTTATTTCACTTGCAACCGATGCGTGACCATAAGGGTGAGCTTCAATATTTCATCGGTGTACAACTAGACGGAAGCGATCATGTAGAGCCTCTAAGAAACCGTTTATCCGAGAGAACCGAGCTACAAAGTGCTAAGTTGGTCAAAGCAACTGCAGAAAATATCGACGGGGCTGTACGTGAACTTCCCGATGCAAATTCGAGACCAGAAGATTTATGGGAAATTCATTCCAAGCCGGTTTTCCCAAGGCCTCACAAGAAGGACACTTCTTCTTGGAAAGCAATACAGAAGATCACGGCAAGGGGTGAATCGGTCGGGCTCCACCATTTCAAGCCAATAAGACCATTGGGGTGTGGAGACACTGGCAGTGTTCACTTGGTGGAATTGCGAGGAACGGGTGAAGTTTTCGCTATGAAGGCGATGGATAAGGCGGTAATGTTGAGTCGAAATAAGGTCCATAGAGCATGCATTGAGAGGGATGTGATTTCACATCTGGATCATCCATTTCTCCCGACCCTCTACTCTTCATTTCAGACTCCGACACATGTTTGTTTGATAACCGACTTCTGTCCCGGCGGAGAGTTATTTGCCTTGCTCGATCATCAGCCGATGAAAATGTTCAGAGAAGATGCTGCAAGATTCTATGCTGCAGAGGTTGTCATAGGCTTGGAATATCTTCATTGTTTAGGATTTATATATCGGGACCTGAAACCCGAAAACATTTTACTCCAAAAGGATGGACATGTTGTCTTAACAGACTTTGATTTATCATTCAAGACATCATGTGAACTGCAGATTATAAACCCTCCTGTGCCTAGAAAGAAGAGGAGGTCTAGGAGTAAACCTCCACCGATGTTCGTTGCAGAACCAGTCTCGCAGTCAAATTCGTTTGTCGGAACAGAGGAGTACATTGCTCCTGAGATTATTATGGGTGCAGGACATGGTAGCTCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTGTATGGAAAAACACCCTTTAGGGGAAGGAATAGGAAGAAGACATTTGCCAATATCTTGCACAAAGACCTTACCTTTCCCAGTAGCATTCCGGCAAGTCTAGCAGCAAGGCAGTTGATAAATGCTCTGCTGCAAAGAGACCCAGCCAAACGTTTAGGAGCAAATACTGGTGCCAATGAAATCAAACAACACCCATTTTTCCGTGGCATTCACTGGGCTCTGATCCGTTGCATGGAGCCACCCCAATTAGATGCTCCTCTTCAATTGAGTGAAAAAGAAGCAAAGCACAAAAACGTGAAGGAGGACGTTGACATTTTCTGA 2682 43.66 MAFQTESNNVENSVSEVNRSRLEDEIAERTAEWGVIVKQEEGQSSFKAIVGNMKRDSGEGNRSKNSSSERYGGGPGSTRTSEELNSGGADPSSFPRVSQELKDALATLQQTFVVSDTTKPDCPIVYASSGFFSMTGYSPKDVIGRNCRFLQGDGTDRKEVEKIRDAVKNGKSFCGRLLNYKKDGSPFWNLLTLTPIKDDNGKTIKFIGMQVEVSKYTEGVNEKELRPNGLPTSLIRYDARQKETAIGSISEVVQTVKHPQPQIQTDQETEKFDLNYVLPKSVHEAQNFTTPGRQTPRWDPTGDLSFEDPGKKLRLSSRISLMGFKRRSLGSAVKHEQIIEPEVLMTKDEERSDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLKLTEYTREEILGKNCRFLQGSETDQATVSRIRDAIRQQTEITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHVEPLRNRLSERTELQSAKLVKATAENIDGAVRELPDANSRPEDLWEIHSKPVFPRPHKKDTSSWKAIQKITARGESVGLHHFKPIRPLGCGDTGSVHLVELRGTGEVFAMKAMDKAVMLSRNKVHRACIERDVISHLDHPFLPTLYSSFQTPTHVCLITDFCPGGELFALLDHQPMKMFREDAARFYAAEVVIGLEYLHCLGFIYRDLKPENILLQKDGHVVLTDFDLSFKTSCELQIINPPVPRKKRRSRSKPPPMFVAEPVSQSNSFVGTEEYIAPEIIMGAGHGSSIDWWALGILLYEMLYGKTPFRGRNRKKTFANILHKDLTFPSSIPASLAARQLINALLQRDPAKRLGANTGANEIKQHPFFRGIHWALIRCMEPPQLDAPLQLSEKEAKHKNVKEDVDIF 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10827919 10832896 - Conep08aG0138800.1 Cone8ag1349 443898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1349 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1349 893 MobiDBLite consensus disorder prediction 64 93 - -
Cone8ag1349 893 FunFam Putative LOV domain-containing protein 111 267 - -
Cone8ag1349 893 FunFam LOV domain-containing protein 566 650 - -
Cone8ag1349 893 SUPERFAMILY PYP-like sensor domain (PAS domain) 382 481 IPR035965 -
Cone8ag1349 893 ProSiteProfiles Protein kinase domain profile. 567 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1349 893 FunFam Putative LOV domain-containing protein 651 866 - -
Cone8ag1349 893 Gene3D Transferase(Phosphotransferase) domain 1 651 868 - -
Cone8ag1349 893 Gene3D PAS domain 111 273 - -
Cone8ag1349 893 ProSiteProfiles PAS repeat profile. 366 439 IPR000014 -
Cone8ag1349 893 MobiDBLite consensus disorder prediction 46 96 - -
Cone8ag1349 893 CDD STKc_phototropin_like 565 873 - -
Cone8ag1349 893 MobiDBLite consensus disorder prediction 1 16 - -
Cone8ag1349 893 ProSiteProfiles PAC domain profile. 171 225 IPR000700 -
Cone8ag1349 893 Pfam Protein kinase domain 570 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1349 893 SMART serkin_6 567 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1349 893 SMART pac_2 443 485 IPR001610 -
Cone8ag1349 893 SMART pac_2 174 216 IPR001610 -
Cone8ag1349 893 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag1349 893 SUPERFAMILY PYP-like sensor domain (PAS domain) 118 210 IPR035965 -
Cone8ag1349 893 SMART pas_2 368 437 IPR000014 -
Cone8ag1349 893 SMART pas_2 99 168 IPR000014 -
Cone8ag1349 893 Gene3D PAS domain 355 519 - -
Cone8ag1349 893 FunFam LOV domain-containing protein 355 519 - -
Cone8ag1349 893 PANTHER FLIPPASE KINASE 1-RELATED 514 879 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone8ag1349 893 Pfam PAS domain 118 214 IPR000014 -
Cone8ag1349 893 Pfam PAS domain 389 481 IPR000014 -
Cone8ag1349 893 Gene3D Phosphorylase Kinase; domain 1 566 650 - -
Cone8ag1349 893 CDD PAS 124 213 IPR000014 -
Cone8ag1349 893 NCBIfam PAS domain S-box protein 391 484 IPR000014 -
Cone8ag1349 893 NCBIfam PAS domain S-box protein 123 214 IPR000014 -
Cone8ag1349 893 SUPERFAMILY Protein kinase-like (PK-like) 545 874 IPR011009 -
Cone8ag1349 893 CDD PAS 381 481 IPR000014 -
Cone8ag1349 893 ProSitePatterns Protein kinases ATP-binding region signature. 573 596 IPR017441 GO:0005524(InterPro)
Cone8ag1349 893 ProSiteProfiles PAS repeat profile. 97 170 IPR000014 -
Cone8ag1349 893 ProSiteProfiles PAC domain profile. 440 494 IPR000700 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0687 Cone-Chr1:6419048 Cone8ag1349 Cone-Chr8:10827919 0 dispersed
Cone3ag0616 Cone-Chr3:3050306 Cone8ag1349 Cone-Chr8:10827919 2.38E-68 dispersed
Cone5ag1195 Cone-Chr5:5398973 Cone8ag1349 Cone-Chr8:10827919 0 dispersed
Cone6ag0358 Cone-Chr6:1746655 Cone8ag1349 Cone-Chr8:10827919 2.63E-13 dispersed
Cone8ag1349 Cone-Chr8:10827919 Cone8ag1613 Cone-Chr8:11935714 4.01E-106 dispersed
Cone10ag1196 Cone-Chr10:8825735 Cone8ag1349 Cone-Chr8:10827919 0 wgd
Cone12ag1283 Cone-Chr12:9795258 Cone8ag1349 Cone-Chr8:10827919 0 wgd
Cone14ag1258 Cone-Chr14:10108389 Cone8ag1349 Cone-Chr8:10827919 4.68E-108 wgd
Cone15ag1280 Cone-Chr15:10048589 Cone8ag1349 Cone-Chr8:10827919 5.93E-107 wgd
Cone3ag1262 Cone-Chr3:31437606 Cone8ag1349 Cone-Chr8:10827919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83139 PF00076 RRM_1 2.00E-19 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1349 K20715 - cit:102626333 1321.61