Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1351 ATGGCTTCGAATTCTGCCACTAAGGAGGTTCCGGCTGCTGTTGATGATAAAAAGGGCAGTACAGAGGACAAGACTTCCAAGTCTGAAACATCATCAACAGAAGCACAGCCAGAACAGCAAAGGACAGCTCCTGTCCCTCCTTTCCCAGGAGCTGATTTTGCTGCTAATCCTTTTGATTTTTCAGCCATGTCTGGGCTGCTTAATGATCCTAGCATTAAGGAATTAGCTGAACAGATAGCAAAAGATCCTGCATTCAACCAGATGGCAGAGCAGCTTCAGAAGACTTTTCAGGGTGCATCATTGGAGGAGGGTATACCTCAATTTGATCAGACACAATACTATTCCACGATGCAACAGGTCATGGAGAATCCTCAATTCATAAACATGGCTGAGCGCCTGGGTACAACACTAATGCAGGATCCATCCATGAATAACATGCTTGAGAGTTTCACAAATCCCTCGAACAAAGACCAACTTGAAGAACGAATGGCACGGATCAAGGAAGACCCTTCTCTCAAGCCTATTTTAGATGAGATAGAGACGGGTGGTCCCGCTGCCATGATGAAGTACTGGAATGATAAAGATGTCCTGCAAAAGTTAGGTGAAGCAATGGGTCTTGCAGTTCAAGGAGATGCAGCTACTTCTACTGAATTTTCTGGTCCAGAGGATTCAGAAGAAGCGGGCAATGAGGATGAGTCCATTGTTCATCAAACTGCTAGTGTCGGCGATGTTGAGGGATTAAAAAGTGCACTAGCATCGGGTGCTGACAAGGATGAAGAAGATTCAGAGGGTAGGACAGCATTGCATTTTGCATGTGGGTATGGTGAGGTCAAGTGTGCTCAGATCCTCCTTGAAGCTGGAGCAACAGTGGATTCTCTGGATAAGAACAAAAACACTGCACTTCATTATGCAGCTGGTTATGGAAGAAAGGAGTGTGTGGCTCTTCTTCTCGAAAATGGCGCTGCTGTTACACTTCAGAACCTTGATGGAAAGACTCCGATTGATGTTGCCAAGCTAAACAACCAAAACGAGGTGCTAAAACTGCTCGAGAAAGATGCCTTCCTATCTTTATCGTCCTCCACATTATTCTCATTTTCAAAGCCCTTGCCATCTCTACTCGTCTCGCCGTCGGGCAAGAGATTCCAAAGTGGAAAATCTGAAGTCGACGGCGATGATCAGCTACCGAGGCAAGAAGAAGAAGAAGAAGGAGGAGGAGGAAAAAGAGCTACTTCTTACGGCAGCGGAAATCCTGCGATAATATCGTCGTGCATCGTTGGTCTCCTTACAGGAGTTGGCGTCATCCTCTTCAATAACGCAGAGCATGAGATACGTGACTTGATCTGGGATGGTATTCCATACAGAGGAGCGTCATGGTTGAGAGAAGAGCCCATTCAAGACACCTGGAAACGAACCGTTTTGATTCCAGCTTATGGTGGTTTTCTCGTAAGTATCTTGAATTTGCTTCGCATTTCTTTGGACGGCCAGCAAAATCGAATTGGAGTTCCAGTTTCCTTATCTAAAAATGTCAAAGCTACATTTCAACCTTTTCTCAAGGCGCTTTCTGCTTGCATTACCCTTGGCACAGGCAAATCCTTGGGGCCTGAAGGTCCAAGCGTTGAGATTGGTACTTCTATTGCTAAGGGCGTTTCTAACCTGTTCGATATAAGCCCTCAAAGAAGACTTTCTTTGGTTGCTGCAGGGTCAGCTGCTGGGATCTCTTCTGGTTTCAATGCTGCTGTTGCTGGCTGTTTCTTCGCAGTAGAATCAGTCTTGTGGCCAACACCAGGAGATTCTTCTTTGTCTCTTACAAATACGACTTCTATGGTTATACTTAGTGCTGTTATAGCTTCTGCAGTTTCAGAAGTTGGTCTTGGTTCTGAACCTGCCTTTAAGGTCCCAGGGGATGACTTTCGCTCACCCAGTGAGAGGGATGTTCTCCAGTGCACCTCATACATGTTGGAAACAGTAGAAAATCTTCATAAGGCTAGAGGGATACCAAAGACTTTGTTCCCTGTTATCGGTGGATTAGCTACTGGACTGCTAGCCTTGGCATATCCCAAAATCCTTTACCAAAGACTTTCAGCTGATTTATTGGCTCAACTTGTAGTTGTAAAGATATTTGCATCCTCCTTGTGCAGGGCATCTGGATTGGTAGGAGGCTACTATGCCCCATCCCTCTTTACTGGTGCAGCAACAGGAATGGCATATGGAAAGTTTATTGGTTTTCTAGTTGCTGATCCCAACCCTGTAAATCAGCTTTCCATATTTGAAGTGGCATCACCCCAAACATATGGCCTGGTTGGAATGGCTGCTACTCTTGCAGGGATTTGTCAGGTCCCTCTTACTGCAGTCTTACTGCTTTTTGAGCTGACACAAGATTACCGAATAGTCCTTCCTCTACTTGGAGCAGTAGGAGTGTCTTCATGGATTACATCGGGACAGACAAGGAGACCTGATGTGGAGACAATTAAGAAACGCAAGACGGAAAATATCAATTCCACTCCAGAATCTGAATTTGAAACCACAACTTACGGAACTGATCTTTGTGAAGTTGAAAGTTCGCTTTGTGTGGATGATTCTGACTATGAATTTTCAGATTTAGACCCGAGAATATTTGTCTCAGAAGCCATGAAAACAAGATTTGTGACCGTCTCTCTGAGCACTTGGGTTACAGAAGCAGTGACTCTCATGCTTCTGGAGAAGCAGTCTTGTGTGATGATTGTGGACAAGGATAAAATTTTGATTGGTTTACTGACACTCGAAAACATTCAAGAGTTCAGCAAAACTGCAAAAGAAAGAAGCGAAAAAGGACCCAAAGAACTCCTTGTATCTGAAATTTGCTCTCTGGATGAAAAAATGTGGTGTGTCATGGAAAGCTAA 2880 44.58 MASNSATKEVPAAVDDKKGSTEDKTSKSETSSTEAQPEQQRTAPVPPFPGADFAANPFDFSAMSGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFQGASLEEGIPQFDQTQYYSTMQQVMENPQFINMAERLGTTLMQDPSMNNMLESFTNPSNKDQLEERMARIKEDPSLKPILDEIETGGPAAMMKYWNDKDVLQKLGEAMGLAVQGDAATSTEFSGPEDSEEAGNEDESIVHQTASVGDVEGLKSALASGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGATVDSLDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNLDGKTPIDVAKLNNQNEVLKLLEKDAFLSLSSSTLFSFSKPLPSLLVSPSGKRFQSGKSEVDGDDQLPRQEEEEEGGGGKRATSYGSGNPAIISSCIVGLLTGVGVILFNNAEHEIRDLIWDGIPYRGASWLREEPIQDTWKRTVLIPAYGGFLVSILNLLRISLDGQQNRIGVPVSLSKNVKATFQPFLKALSACITLGTGKSLGPEGPSVEIGTSIAKGVSNLFDISPQRRLSLVAAGSAAGISSGFNAAVAGCFFAVESVLWPTPGDSSLSLTNTTSMVILSAVIASAVSEVGLGSEPAFKVPGDDFRSPSERDVLQCTSYMLETVENLHKARGIPKTLFPVIGGLATGLLALAYPKILYQRLSADLLAQLVVVKIFASSLCRASGLVGGYYAPSLFTGAATGMAYGKFIGFLVADPNPVNQLSIFEVASPQTYGLVGMAATLAGICQVPLTAVLLLFELTQDYRIVLPLLGAVGVSSWITSGQTRRPDVETIKKRKTENINSTPESEFETTTYGTDLCEVESSLCVDDSDYEFSDLDPRIFVSEAMKTRFVTVSLSTWVTEAVTLMLLEKQSCVMIVDKDKILIGLLTLENIQEFSKTAKERSEKGPKELLVSEICSLDEKMWCVMES 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10839315 10846061 - Conep08aG0139000.1 Cone8ag1351 443900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1351 959 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 394 953 IPR050368 GO:0009535(PANTHER)
Cone8ag1351 959 Pfam STI1/HOP, DP domain 162 205 IPR041243 -
Cone8ag1351 959 ProSiteProfiles CBS domain profile. 877 935 IPR000644 -
Cone8ag1351 959 Pfam Ankyrin repeats (3 copies) 236 327 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 SUPERFAMILY Ankyrin repeat 229 350 IPR036770 -
Cone8ag1351 959 SMART ANK_2a 263 292 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 SMART ANK_2a 230 259 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 SMART ANK_2a 296 325 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 SMART ANK_2a 329 359 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 SUPERFAMILY CBS-domain pair 870 925 IPR046342 -
Cone8ag1351 959 ProSiteProfiles Ankyrin repeat region circular profile. 263 295 - -
Cone8ag1351 959 CDD Voltage_gated_ClC 426 808 - -
Cone8ag1351 959 MobiDBLite consensus disorder prediction 1 54 - -
Cone8ag1351 959 SUPERFAMILY Clc chloride channel 419 827 IPR014743 -
Cone8ag1351 959 MobiDBLite consensus disorder prediction 211 232 - -
Cone8ag1351 959 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 FunFam Ankyrin repeat domain-containing protein 2 223 300 - -
Cone8ag1351 959 PRINTS Chloride channel signature 780 799 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1351 959 PRINTS Chloride channel signature 762 778 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1351 959 PRINTS Chloride channel signature 518 537 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1351 959 PRINTS Chloride channel signature 569 588 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1351 959 ProSiteProfiles Ankyrin repeat region circular profile. 296 327 - -
Cone8ag1351 959 Gene3D - 301 352 IPR036770 -
Cone8ag1351 959 Gene3D Clc chloride channel 416 825 - -
Cone8ag1351 959 Pfam Voltage gated chloride channel 515 811 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1351 959 MobiDBLite consensus disorder prediction 11 29 - -
Cone8ag1351 959 ProSiteProfiles Ankyrin repeat profile. 296 328 IPR002110 GO:0005515(InterPro)
Cone8ag1351 959 FunFam Ankyrin repeat domain-containing protein 2 301 352 - -
Cone8ag1351 959 MobiDBLite consensus disorder prediction 376 411 - -
Cone8ag1351 959 Gene3D - 223 300 IPR036770 -
Cone8ag1351 959 Gene3D - 870 952 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1351 K03281 - - vvi:100253731 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1281 Cone-Chr12:9785923 Cone8ag1351 Cone-Chr8:10839315 4.35E-268 dispersed
Cone14ag1276 Cone-Chr14:10209468 Cone8ag1351 Cone-Chr8:10839315 4.42E-98 dispersed
Cone15ag1302 Cone-Chr15:10173264 Cone8ag1351 Cone-Chr8:10839315 2.19E-100 dispersed
Cone10ag1194 Cone-Chr10:8806181 Cone8ag1351 Cone-Chr8:10839315 1.94E-68 wgd
Cone12ag1280 Cone-Chr12:9779893 Cone8ag1351 Cone-Chr8:10839315 2.71E-157 wgd
Cone3ag1265 Cone-Chr3:31466501 Cone8ag1351 Cone-Chr8:10839315 6.51E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33