Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1353 ATGGATGAAAACAAGGGAACAATTAACGCCTTAATGGATAACGCTCATTCTCATATTGAGATGGGATCGTTAGAAAAACGATCAAACGAATTTGAGAATAAGATCGTAGCTACATTGGGATCAAATGAACCGAAAGAAAATACTTTTGAGGAGAATCTACAGAGATTTCCACTGGTCGAAGATTCACAGATTTTTTACTCTCAACATTTGAGTTATACTGTGATTAATAGCATCAAGATTGTAGTTTTTTCCTCCAAAATTAACTTACTCATGCCTTTCGGGCCTATTGCTATCATAGTTGCAAAAGTATCTAACCATGAGGGTTGGGTCTTCCTTCTAAGCTTACTGGGAATCATACCTTTGGCTGAGCGTCTCGGTTATGCTACGGAGCAGCTGGCTTGCTATACTGGAGCTACGGTTGGAGGACTTTTAAATGCTACTTTTGGAAACGCAACAGAACTCATAATTTCAATCTATGCACTGAGAAGTGGAATGTTACGTGTTATTCAACAGTCTTTGCTAGGCTCAATTTTGTCAAACATGTTACTTGTGCTTGGATGTGCTTTCTTTGCTGGCGGACTTGTATTTTCTAAGAAGGAACAGGCTACTGCTTCTGTGAATTCCGGATTGCTGTTGATGGCAGTTATGGGCCTTGCATTTCCAGCTGTCCTCCACTCTACCCATACAGAGTTGCATACAGGAAAGTCAGAGTTGGCTCTTTCAAGGTTTAGCAGCTGCATTATGCTTGTAGCATATGCTGGGTATCTTTTTTTCCAACTTAAAAGCGAAAGGAATCCATATGTACCGGTTAGCGAGGGAGATACTCAGATGGAAGAGAATTCTGAGGATGAGGAAGAACCTGAGATATCTAAGTGGGAATCAATAATTTGGCTGTCTATTTTAACTGTGTGGATTTCCGTCCTCTCAGAATACTTGGTGAACGCCATAGAGGGAGCGTCGGTAGCGATGAAAATACCAGTAGCGTTCATTAGTGTCATTCTTCTTCCTATTGTCGGGAATGCTGCCGAGCATGCAGGTGCTGTTATGTTTGCCATGAAAGATAAACTTGACATATCTGTGGGAGTGGCAATAGGATCCTCCACACAAATATCCATGTTTGGGATTCCATTTTGTGTGGTCATTGGGTGGATAATGGGACGTCCTTTGGACTTAAATTTTCAAATTTTCGAGACAGCCACACTCTTCATAACCGTTCTAGTAGTAGCCTTTATGCTGCAGGATGGAGCCTCTAATTACCTCAAAGGATTGATGCTCATTCTTTGCTACGTAATAGTTGCCGCAAGTTTCTTTGTACATGTTGATCCTACTTCAGTAGCGGATAAGACTACGAAATCCGGTAACTGA 1365 41.32 MDENKGTINALMDNAHSHIEMGSLEKRSNEFENKIVATLGSNEPKENTFEENLQRFPLVEDSQIFYSQHLSYTVINSIKIVVFSSKINLLMPFGPIAIIVAKVSNHEGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRSGMLRVIQQSLLGSILSNMLLVLGCAFFAGGLVFSKKEQATASVNSGLLLMAVMGLAFPAVLHSTHTELHTGKSELALSRFSSCIMLVAYAGYLFFQLKSERNPYVPVSEGDTQMEENSEDEEEPEISKWESIIWLSILTVWISVLSEYLVNAIEGASVAMKIPVAFISVILLPIVGNAAEHAGAVMFAMKDKLDISVGVAIGSSTQISMFGIPFCVVIGWIMGRPLDLNFQIFETATLFITVLVVAFMLQDGASNYLKGLMLILCYVIVAASFFVHVDPTSVADKTTKSGN 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10849714 10853724 - Conep08aG0139200.1 Cone8ag1353 443902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1353 454 FunFam Vacuolar cation/proton exchanger 282 438 - -
Cone8ag1353 454 FunFam Vacuolar cation/proton exchanger 138 273 - -
Cone8ag1353 454 NCBIfam calcium/proton exchanger 91 437 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cone8ag1353 454 Gene3D - 282 438 IPR044880 -
Cone8ag1353 454 Gene3D - 137 271 IPR044880 -
Cone8ag1353 454 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 51 442 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cone8ag1353 454 Pfam Sodium/calcium exchanger protein 109 260 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag1353 454 Pfam Sodium/calcium exchanger protein 294 436 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0475 Cone-Chr11:2399847 Cone8ag1353 Cone-Chr8:10849714 1.03E-195 dispersed
Cone20ag1377 Cone-Chr20:8792808 Cone8ag1353 Cone-Chr8:10849714 3.18E-188 dispersed
Cone3ag0420 Cone-Chr3:2063062 Cone8ag1353 Cone-Chr8:10849714 1.39E-107 dispersed
Cone8ag1353 Cone-Chr8:10849714 Cone17ag0026 Cone-Chr17:185953 2.62E-188 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1353 K07300 - csv:101215915 628.246