Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1358 ATGGGTTACATGTGTGATTTCTGTGGGGATCGAAGGTCAATGGTCTATTGCCGTTCTGATGCCGCCTGCCTCTGTTTATCATGTGACCGGAATGTTCACTCAGCTAATGCCTTGTCAAGGCGCCATTCTAGAACTCTATTGTGTGAAAGATGCAATTCACATCCTGCATTAGTAAGATGTTTTGAAGAGAATATCTCTCTTTGTCAGAGTTGTGACAGAAGGGGCCATGGAGCTTCTACTTCTTCGTCGCATAAGAGGCAGACACTTATTTGTTACTCTGGCTGCCCTTCAGCTGCAGAGCTTTCTTCGATCTGGTCGTTTGCTTTAGATCTCCCTTCTGCCGGAGAATCTTGTGAGCAAGGATTAGGGATGATGAGCATAGCGGAGAATAGTAGTATGGGCGGTGAGTGGGGCCAGACCGAAAATAATTCTTGTCAGAATATCTCTGATGAAGCCGAGGATGGTCGTGGTGTGGATAAATCAAATTGGATTGGGCCTTCTCTATCTCCCCTTTTGGACCAGCCTGGCGGATCTTCAAATCCAACCTTTTCCAAGCAGCTATGCTATACTGGAATAAAGGGTCCTCCTGGAAGCTTTGGAGAAGATGATGACCTCTATGAGGATTTTAATATGGATGAAATGGATTTGAGCCTTGAAAGCTATGAGGAGCTATTTGGTGTAACTCTTAATCATTCAGAAGAGCTGTTAGAGAATGGTGGGATTGATAGCTTGTTCAGGACAAAGGACTTTTTTGCAGCCGATTCCAGTTGCCTAGGTGCAGCTGCCACTGAGGGATCATCTGCTGGACTGGTTATTAATGCAGTGCAACCAGCATGTAGCACTGCTGCTTCTGGAGATTCCGTTATGAGTACAAAAACAGAACCTATTCTTTGCTTTGCCACTAAGGCAGTGCATTCTAGCTTATCATTTTCTGGCCTTACTGGAGAGAGTAGTGCAGGAGATCATCAAGATTGTGGAGTTTCTCCTATCCTTCTAATGGGTGAGCCTCCATGGTGTCCACCTTTCCCAGAAAGTTCCTCCCAGTCTGCTAATCGTAATAATGCTGTTTTGCGTTACAAGGAAAAGAAAAAATCCCGGAAGTTTGAGAAGAAGGTTAGGTATGCATCAAGGAAAGCAAGAGCTGATGTAAGGAAGCGTGTAAAGGGGCGTTTTGTCAAAGCCGGAGATGCTTATGATTACGATCCCTTGAGCCCAACCAGAAGCTACTGA 1230 45.2 MGYMCDFCGDRRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSHPALVRCFEENISLCQSCDRRGHGASTSSSHKRQTLICYSGCPSAAELSSIWSFALDLPSAGESCEQGLGMMSIAENSSMGGEWGQTENNSCQNISDEAEDGRGVDKSNWIGPSLSPLLDQPGGSSNPTFSKQLCYTGIKGPPGSFGEDDDLYEDFNMDEMDLSLESYEELFGVTLNHSEELLENGGIDSLFRTKDFFAADSSCLGAAATEGSSAGLVINAVQPACSTAASGDSVMSTKTEPILCFATKAVHSSLSFSGLTGESSAGDHQDCGVSPILLMGEPPWCPPFPESSSQSANRNNAVLRYKEKKKSRKFEKKVRYASRKARADVRKRVKGRFVKAGDAYDYDPLSPTRSY 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10874011 10877221 + Conep08aG0139700.1 Cone8ag1358 443907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1358 409 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Cone8ag1358 409 SMART bboxneu5 48 89 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 Pfam ANCHR-like B-box zinc-binding domain 47 85 - -
Cone8ag1358 409 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone8ag1358 409 Pfam CCT motif 352 394 IPR010402 GO:0005515(InterPro)
Cone8ag1358 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515(InterPro)
Cone8ag1358 409 CDD Bbox1_BBX-like 47 89 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1396 Cone-Chr12:10278523 Cone8ag1358 Cone-Chr8:10874011 1.63E-62 dispersed
Cone1ag0117 Cone-Chr1:655720 Cone8ag1358 Cone-Chr8:10874011 1.73E-07 dispersed
Cone4ag1724 Cone-Chr4:12765271 Cone8ag1358 Cone-Chr8:10874011 8.48E-09 dispersed
Cone7ag1644 Cone-Chr7:11095778 Cone8ag1358 Cone-Chr8:10874011 2.69E-09 dispersed
Cone8ag1358 Cone-Chr8:10874011 Cone8ag1452 Cone-Chr8:11221367 9.52E-54 dispersed
Cone12ag1303 Cone-Chr12:9891121 Cone8ag1358 Cone-Chr8:10874011 3.80E-230 wgd
Cone3ag1271 Cone-Chr3:31548258 Cone8ag1358 Cone-Chr8:10874011 1.48E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0338 . 10 383 C2C2-CO-like Transcription Factor Family AT5G15850 51.8 5.1e-54 209.1
Cone11ag0338 . 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 52.7 1.9e-61 233.8
Cone7ag1644 . 1 323 C2C2-CO-like Transcription Factor Family AT5G24930 55.9 3.1e-67 253.1
Cone4ag1724 . 1 321 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 7.7e-66 248.4
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 57.5 1.2e-93 340.9
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 1.6e-90 330.5
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone3ag1218 . 1 213 C2C2-CO-like Transcription Factor Family AT1G75540 50.5 3.3e-47 186.4
Cone6ag1668 . 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 64.4 7.0e-57 217.6
Cone9ag1590 . 10 187 C2C2-CO-like Transcription Factor Family AT2G21320 63.5 9.4e-54 207.2
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT2G21320 77.5 5.9e-40 161.4
Cone6ag1668 . 1 175 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.1e-55 213.8
Cone9ag1590 . 10 185 C2C2-CO-like Transcription Factor Family AT4G38960 63.1 2.4e-55 212.6
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT4G38960 76.5 1.3e-40 163.7
Cone3ag1218 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 8.3e-48 188.0
Cone10ag1103 . 1 118 C2C2-CO-like Transcription Factor Family AT4G39070 76.3 1.1e-47 187.6
Cone4ag1948 . 1 195 C2C2-CO-like Transcription Factor Family AT4G39070 51.7 1.2e-46 184.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46729 PF00141 peroxidase 1.10E-74 CL0617 Cone TF