Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1358 ATGGGTTACATGTGTGATTTCTGTGGGGATCGAAGGTCAATGGTCTATTGCCGTTCTGATGCCGCCTGCCTCTGTTTATCATGTGACCGGAATGTTCACTCAGCTAATGCCTTGTCAAGGCGCCATTCTAGAACTCTATTGTGTGAAAGATGCAATTCACATCCTGCATTAGTAAGATGTTTTGAAGAGAATATCTCTCTTTGTCAGAGTTGTGACAGAAGGGGCCATGGAGCTTCTACTTCTTCGTCGCATAAGAGGCAGACACTTATTTGTTACTCTGGCTGCCCTTCAGCTGCAGAGCTTTCTTCGATCTGGTCGTTTGCTTTAGATCTCCCTTCTGCCGGAGAATCTTGTGAGCAAGGATTAGGGATGATGAGCATAGCGGAGAATAGTAGTATGGGCGGTGAGTGGGGCCAGACCGAAAATAATTCTTGTCAGAATATCTCTGATGAAGCCGAGGATGGTCGTGGTGTGGATAAATCAAATTGGATTGGGCCTTCTCTATCTCCCCTTTTGGACCAGCCTGGCGGATCTTCAAATCCAACCTTTTCCAAGCAGCTATGCTATACTGGAATAAAGGGTCCTCCTGGAAGCTTTGGAGAAGATGATGACCTCTATGAGGATTTTAATATGGATGAAATGGATTTGAGCCTTGAAAGCTATGAGGAGCTATTTGGTGTAACTCTTAATCATTCAGAAGAGCTGTTAGAGAATGGTGGGATTGATAGCTTGTTCAGGACAAAGGACTTTTTTGCAGCCGATTCCAGTTGCCTAGGTGCAGCTGCCACTGAGGGATCATCTGCTGGACTGGTTATTAATGCAGTGCAACCAGCATGTAGCACTGCTGCTTCTGGAGATTCCGTTATGAGTACAAAAACAGAACCTATTCTTTGCTTTGCCACTAAGGCAGTGCATTCTAGCTTATCATTTTCTGGCCTTACTGGAGAGAGTAGTGCAGGAGATCATCAAGATTGTGGAGTTTCTCCTATCCTTCTAATGGGTGAGCCTCCATGGTGTCCACCTTTCCCAGAAAGTTCCTCCCAGTCTGCTAATCGTAATAATGCTGTTTTGCGTTACAAGGAAAAGAAAAAATCCCGGAAGTTTGAGAAGAAGGTTAGGTATGCATCAAGGAAAGCAAGAGCTGATGTAAGGAAGCGTGTAAAGGGGCGTTTTGTCAAAGCCGGAGATGCTTATGATTACGATCCCTTGAGCCCAACCAGAAGCTACTGA 1230 45.2 MGYMCDFCGDRRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSHPALVRCFEENISLCQSCDRRGHGASTSSSHKRQTLICYSGCPSAAELSSIWSFALDLPSAGESCEQGLGMMSIAENSSMGGEWGQTENNSCQNISDEAEDGRGVDKSNWIGPSLSPLLDQPGGSSNPTFSKQLCYTGIKGPPGSFGEDDDLYEDFNMDEMDLSLESYEELFGVTLNHSEELLENGGIDSLFRTKDFFAADSSCLGAAATEGSSAGLVINAVQPACSTAASGDSVMSTKTEPILCFATKAVHSSLSFSGLTGESSAGDHQDCGVSPILLMGEPPWCPPFPESSSQSANRNNAVLRYKEKKKSRKFEKKVRYASRKARADVRKRVKGRFVKAGDAYDYDPLSPTRSY 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10874011 10877221 + Conep08aG0139700.1 Cone8ag1358 443907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1358 409 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Cone8ag1358 409 SMART bboxneu5 48 89 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone8ag1358 409 Pfam ANCHR-like B-box zinc-binding domain 47 85 - -
Cone8ag1358 409 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone8ag1358 409 Pfam CCT motif 352 394 IPR010402 GO:0005515(InterPro)
Cone8ag1358 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515(InterPro)
Cone8ag1358 409 CDD Bbox1_BBX-like 47 89 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1396 Cone-Chr12:10278523 Cone8ag1358 Cone-Chr8:10874011 1.63E-62 dispersed
Cone1ag0117 Cone-Chr1:655720 Cone8ag1358 Cone-Chr8:10874011 1.73E-07 dispersed
Cone4ag1724 Cone-Chr4:12765271 Cone8ag1358 Cone-Chr8:10874011 8.48E-09 dispersed
Cone7ag1644 Cone-Chr7:11095778 Cone8ag1358 Cone-Chr8:10874011 2.69E-09 dispersed
Cone8ag1358 Cone-Chr8:10874011 Cone8ag1452 Cone-Chr8:11221367 9.52E-54 dispersed
Cone12ag1303 Cone-Chr12:9891121 Cone8ag1358 Cone-Chr8:10874011 3.80E-230 wgd
Cone3ag1271 Cone-Chr3:31548258 Cone8ag1358 Cone-Chr8:10874011 1.48E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46729 PF00141 peroxidase 1.10E-74 CL0617 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1358 - - - 0.0