Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag1366 | ATGGCGGATTCGGACAACGAGTCAGGAGGAGGGGGGCAGCACAGCAACGCGAGGGAGCAGGATATGCTGTTGCCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTGCCGGCGAACGCGAAGATATCGAAGGACGCAAAGGAGACGTTACAGGAGTGTGTATCTGAGTTTATAAGCTTCATAACGGGTGAGGCGTCTGACAAGTGTCAGAGAGAGAAAAGGAAGACGATAAACGGCGATGATTTATTGTGGGCCATGACGACTCTAGGGTTCGAGGAGTACGTGGACCCGCTCAAGATTCATCTGATGAAGTATAGGGAGATGGAGGGCGAGAAGAGCTCCATGGGGAGGCAGGGGGACAAGGATAGTCACTCTGGCAGCGTAGTCGGTGGCGCTGGGGTCAGTTCCGGCGGTGATGGAAGTGGGTTTAATGGAGGGATGTACGGAGGGATGATGATGATGGGACATAGTAATCAAATGTACGGTTCTGATGGATTTAGTCATCGTGGTACTGGTACTGGTGGCGGGAAAGGTGGGAGTGGTGGTTCTGGGGGCGGACGACGGTAG | 570 | 53.86 | MADSDNESGGGGQHSNAREQDMLLPIANVSRIMKKALPANAKISKDAKETLQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIHLMKYREMEGEKSSMGRQGDKDSHSGSVVGGAGVSSGGDGSGFNGGMYGGMMMMGHSNQMYGSDGFSHRGTGTGGGKGGSGGSGGGRR | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10907603 | 10909516 | - | Conep08aG0140500.1 | Cone8ag1366 | 443915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag1366 | 189 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone8ag1366 | 189 | Gene3D | Histone, subunit A | 11 | 128 | IPR009072 | GO:0046982(InterPro) | |
Cone8ag1366 | 189 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 11 | 147 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone8ag1366 | 189 | MobiDBLite | consensus disorder prediction | 112 | 138 | - | - | |
Cone8ag1366 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 51 | 69 | - | - | |
Cone8ag1366 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 89 | 107 | - | - | |
Cone8ag1366 | 189 | PRINTS | CCAAT-binding transcription factor subunit A signature | 70 | 88 | - | - | |
Cone8ag1366 | 189 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 23 | 87 | IPR003958 | - | |
Cone8ag1366 | 189 | FunFam | Nuclear transcription factor Y subunit B-3 | 12 | 132 | - | - | |
Cone8ag1366 | 189 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 54 | 70 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone8ag1366 | 189 | MobiDBLite | consensus disorder prediction | 160 | 189 | - | - | |
Cone8ag1366 | 189 | SUPERFAMILY | Histone-fold | 20 | 124 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1293 | Cone-Chr13:9673921 | Cone8ag1366 | Cone-Chr8:10907603 | 8.22E-57 | dispersed | |
Cone19ag1279 | Cone-Chr19:8705820 | Cone8ag1366 | Cone-Chr8:10907603 | 1.09E-58 | dispersed | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone8ag1366 | Cone-Chr8:10907603 | 3.06E-52 | dispersed | |
Cone20ag0927 | Cone-Chr20:6668636 | Cone8ag1366 | Cone-Chr8:10907603 | 2.75E-49 | dispersed | |
Cone3ag0290 | Cone-Chr3:1505735 | Cone8ag1366 | Cone-Chr8:10907603 | 3.96E-58 | dispersed | |
Cone5ag0323 | Cone-Chr5:1363391 | Cone8ag1366 | Cone-Chr8:10907603 | 6.71E-55 | dispersed | |
Cone5ag1798 | Cone-Chr5:12749061 | Cone8ag1366 | Cone-Chr8:10907603 | 4.11E-46 | dispersed | |
Cone8ag0794 | Cone-Chr8:7983909 | Cone8ag1366 | Cone-Chr8:10907603 | 3.88E-55 | dispersed | |
Cone9ag1230 | Cone-Chr9:8978709 | Cone8ag1366 | Cone-Chr8:10907603 | 6.88E-42 | transposed | |
Cone12ag1312 | Cone-Chr12:9924263 | Cone8ag1366 | Cone-Chr8:10907603 | 2.02E-105 | wgd | |
Cone14ag1217 | Cone-Chr14:9905417 | Cone8ag1366 | Cone-Chr8:10907603 | 1.37E-67 | wgd | |
Cone15ag1238 | Cone-Chr15:9791392 | Cone8ag1366 | Cone-Chr8:10907603 | 2.97E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46730 | PF00806 | PUF | 2.40E-05 | CL0020 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag1366 | K08065 | - | rcu:8260269 | 233.802 |