Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1366 ATGGCGGATTCGGACAACGAGTCAGGAGGAGGGGGGCAGCACAGCAACGCGAGGGAGCAGGATATGCTGTTGCCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTGCCGGCGAACGCGAAGATATCGAAGGACGCAAAGGAGACGTTACAGGAGTGTGTATCTGAGTTTATAAGCTTCATAACGGGTGAGGCGTCTGACAAGTGTCAGAGAGAGAAAAGGAAGACGATAAACGGCGATGATTTATTGTGGGCCATGACGACTCTAGGGTTCGAGGAGTACGTGGACCCGCTCAAGATTCATCTGATGAAGTATAGGGAGATGGAGGGCGAGAAGAGCTCCATGGGGAGGCAGGGGGACAAGGATAGTCACTCTGGCAGCGTAGTCGGTGGCGCTGGGGTCAGTTCCGGCGGTGATGGAAGTGGGTTTAATGGAGGGATGTACGGAGGGATGATGATGATGGGACATAGTAATCAAATGTACGGTTCTGATGGATTTAGTCATCGTGGTACTGGTACTGGTGGCGGGAAAGGTGGGAGTGGTGGTTCTGGGGGCGGACGACGGTAG 570 53.86 MADSDNESGGGGQHSNAREQDMLLPIANVSRIMKKALPANAKISKDAKETLQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIHLMKYREMEGEKSSMGRQGDKDSHSGSVVGGAGVSSGGDGSGFNGGMYGGMMMMGHSNQMYGSDGFSHRGTGTGGGKGGSGGSGGGRR 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10907603 10909516 - Conep08aG0140500.1 Cone8ag1366 443915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1366 189 MobiDBLite consensus disorder prediction 1 21 - -
Cone8ag1366 189 Gene3D Histone, subunit A 11 128 IPR009072 GO:0046982(InterPro)
Cone8ag1366 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 147 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone8ag1366 189 MobiDBLite consensus disorder prediction 112 138 - -
Cone8ag1366 189 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Cone8ag1366 189 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Cone8ag1366 189 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Cone8ag1366 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Cone8ag1366 189 FunFam Nuclear transcription factor Y subunit B-3 12 132 - -
Cone8ag1366 189 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1366 189 MobiDBLite consensus disorder prediction 160 189 - -
Cone8ag1366 189 SUPERFAMILY Histone-fold 20 124 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1293 Cone-Chr13:9673921 Cone8ag1366 Cone-Chr8:10907603 8.22E-57 dispersed
Cone19ag1279 Cone-Chr19:8705820 Cone8ag1366 Cone-Chr8:10907603 1.09E-58 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone8ag1366 Cone-Chr8:10907603 3.06E-52 dispersed
Cone20ag0927 Cone-Chr20:6668636 Cone8ag1366 Cone-Chr8:10907603 2.75E-49 dispersed
Cone3ag0290 Cone-Chr3:1505735 Cone8ag1366 Cone-Chr8:10907603 3.96E-58 dispersed
Cone5ag0323 Cone-Chr5:1363391 Cone8ag1366 Cone-Chr8:10907603 6.71E-55 dispersed
Cone5ag1798 Cone-Chr5:12749061 Cone8ag1366 Cone-Chr8:10907603 4.11E-46 dispersed
Cone8ag0794 Cone-Chr8:7983909 Cone8ag1366 Cone-Chr8:10907603 3.88E-55 dispersed
Cone9ag1230 Cone-Chr9:8978709 Cone8ag1366 Cone-Chr8:10907603 6.88E-42 transposed
Cone12ag1312 Cone-Chr12:9924263 Cone8ag1366 Cone-Chr8:10907603 2.02E-105 wgd
Cone14ag1217 Cone-Chr14:9905417 Cone8ag1366 Cone-Chr8:10907603 1.37E-67 wgd
Cone15ag1238 Cone-Chr15:9791392 Cone8ag1366 Cone-Chr8:10907603 2.97E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46730 PF00806 PUF 2.40E-05 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1366 K08065 - rcu:8260269 233.802