Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1368 ATGAAGAAGGAAAAAACAGAGAGGGAGGAATTGGAAGAAGGCAGTAGACAGATGTCTTCGAAGTCAACAAACAAGACGAATACAAACTGTTCCCGGAGCACCTCTGCTCGATCCAAACTTGGGGCCCACATGGTTGCTCAGACCCCTGTTGATGCAAAGCTCCATGTAGATTTCGAAGAATCCGAAAACCGTTTCGAGTACTCCACTTCAATAGATTTCAATACCTCCACTTATACTACCAATGTCCCCTCCTCCACTGTATCGTCTTATCTCCAGAAGATGCAAAGAGGAAGGCTAATTCAACCATTCGGTTGTATGATTGCAGTTGATGAAGAGAATTTCTCCGTTCTAGCTTACAGTGAAAATGCTCCTGAAATGTTGGACCTGGCCCCACATGCGGTTCCTAGTATTGAACAGAAAGAAGCACTTAGCTTCGGAACAGATGTTAGGTCCCTTTTTCGGCCTTCAGGCTCAGCTGCCTTGCAAAAAGCAGCCAATTTTAGAGATGTGAATCTTCTAAACCCATTATTACTTCATTGCAAAAACTCAGGTAAGCCCTTCTATGCAATTCTGCACAGAATCGATGTGGGTTTAGTCATAGATTTAGAGCCAGTAAATCCTGCAGATGTACCTGTAACAGCTGCCGGAGCGTTGAAATCGTATAAGCTTGCAGCCAATGCAATCTCTAGATTGCAATCCTTGCCTAGTGGAAATTTATTTATATTGTGTGATGTATTGGTTAAGGAAGTTAGTGATTTGATGGGTTACGATAGAGTAATGGTGTACAAATTTCACGACGATGAACATGGAGAAGTCGTAGCAGAATGGTGTAGGCCTGACTTGGAGCCTTATCTAGGTTTGCATTACCCGTCTACTGATATACCTCAAGCTTCTAGGTTTCTCTTTATGAAGAATAAGGTCAGGATGATATGTGATTGTTTAGCACCTTCAGTTGAAGTGGTTCAAGATAGTAGACTGGCTCAACCATTGAGTCTTGCGGGGTCCACTTTGAGGTCTCCTCACGGTTGTCATGCACAGTATATGGCTAACATGGGTTCTATTGCGTCTCTTGTAATGTCTGTCGTGGTAAATGAGGAAGATGATGAGGTGGTGAATGATCAGCCGAAGGGAAGAAAGCTATGGGGTCTAGTGGTTTGTCACCACGCAAGCCCTAGATTTGTTCCATTCCCTTTGAGATATGCTTGTGAGTTTCTGATTCAAGTCTTTGGAGTTCAAATGAACAAAGAGGTTGAATTGGCCGCTCAGTTGAGGGAAAAACATATTTTTCAAACTCAAACCGTCCTTTGCGATATGCTTCTTAGGGATGCTCCAGTTGGAATCGTCACTCATTCTCCGAATATAATGGATTTAGTAAAGTGTGGTGGAGCCGCCCTTATTTATAAGAAGAAAACTTGGTTGCTTGGAGTCACTCCAAGTGAGGAACAAATCTGGGATTTAGCCAATTGGCTTATTGAACACCATAGTGGGAGCACGGGATTAAGTACGGATAGTCTTCTGGAAGCTGGCTATCCAGGTGCTTCTGATCTAGGCGATGAGGTTTGTGGAATGGCTGCCGTTAGAATTAAGGCTAATGATTTTGTCTTTTGGTTCCGGTCTCACACAGGGAAGGAAATCAAGTGGGGTGGAGCCAAACACGACCCAGACGACAAAGATGATGGAAGGAAAATGCACCCGAGATCGTCTTTCAAGGCTTTTTTAGAAGTGGTGAAGAGGCGTAGTCAACCTTGGGAGGACGTGGAAATGGATGCTATTCATTCGATTCAGTTGATATTGAGAGGCTCTTTGCAAGATGAGGTGGAGGATTCTAAGATGATTGTGAATGTCCCTTCAGGTGATGGTGATGGGATGCAGAGAGTGGATGAGTTGCACATTATAACAAGCGAAATGGTTCGTTTGATAGAGACAGCTGCTGTCCCCATCTTGGCCATAGATTCTTCGGGTAATATTAATGGGTGGAATTCCAAAGCTACTGAATTAACCGGATTGCCTGTCCATCAAGCCGTTACCATGACCTTGCTTGATGTTGTTGTGGTTGATTCGGTTGATGTCATGAAGAACATGCTCTCCTTGGCTTTGCGAGGTATAGAAGACCAAAACATTGAATTGAAACTGAAAACATTTGGGGATCAGGAAAAAAAAGGGCCCGTGATCTTGGTAGCTAATGCGTGTTGTAGCCGAGACATGAACGAAAACATTGTGGGGGTTTGCTTTGTTGGCCAGGATGTTACGGGACAAAGACTGATTATGGACCAATATACGCATATCCAAGGTGATTTTGTCGGGATTATGCGCAGCCCGTCTGCTCTTATCCCTCCGATTTTTATGACCAATGAGGATGGTCAATGCTTGGATTGGAATGATGCGATGCAAAATTTGTCGGGTTTGAGAAGGGAAGAGGCGCTAAACCGGATGCTTCTGGGAGAGGTTTTTACAGTCAACAATTTTGGCTGTCGGGTCAAAGACCATGACACTTTGACTAAGCTTAGAATACTATTGAACAAGGTTGTTTCCGGCCAGGAAGCGGAGAAATTGTTGTTCGGGTTTTTTGATGGGCAGGGAAACTATGTTGAAGCATTACTATCGATGACCAAACGGACTAATTTGGAAGGAAGAATTAGTGGGGTTTTCTGCTTCTTGCATGTGGCAAGTCCTGAGCTTCAATATGCTTTGCAGGTTCAAAGAATATCAGAAGAAGCCACTGCTGATAGCTTGAAGAAATTGGCATATATTAGACGGGAAATTATCAATCCTTTGAATGGGATTAAGTTTATGCAGAGTCTAATGGAATCTTCTGATTTAAGCAAAGAGCAAAAGCAGCTATTGAAATCTAGCTCATTGTGTCAACAGCAGTTAGTCAAGATTGTAGACGACACTGATATCGAAAGTATCGAAGAATGTTACATGGATTTGAACTGTGTCGAGTTTAACCTTGGGGAAGTTCTAGAAGCTGTCATTAGCCAAGTAATGATTTTGAGCCAAGAACAGCGGGTCCAGATCATACACGAGTCAGCTGCTGATGTGTCGTCATTCTACTTGTACGGAGACAATTTGAGGCTTCAACAAGCACTTGCAGATTTCTTGAGCAACGTGATCATGTTCACACCTGCATTCGAAGGATCATCCGTTACGCTCAAAGTGACTGCAAGGAAGGAACATATAGGAACGAAAATTCTCATCGTCCATCTCGAGTTTAGGATCACTCATCCAGCACCCGGGATTCCGGAGAATTTAATCCGAGAGATGTTCAGGAAAAACCGTAATATATCGAGGGAAGGGGTGGGCCTATTTATAAGCCATAAACTTGTGAAGCTAATGAATGGGACAGTGCAGTATATTAGAGAAGCAGAAAGATCATCATTTATCATCCTTGTTGAATTTCCATTGGTCTGCGAAAACGACCGTTGA 3426 43.26 MKKEKTEREELEEGSRQMSSKSTNKTNTNCSRSTSARSKLGAHMVAQTPVDAKLHVDFEESENRFEYSTSIDFNTSTYTTNVPSSTVSSYLQKMQRGRLIQPFGCMIAVDEENFSVLAYSENAPEMLDLAPHAVPSIEQKEALSFGTDVRSLFRPSGSAALQKAANFRDVNLLNPLLLHCKNSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAANAISRLQSLPSGNLFILCDVLVKEVSDLMGYDRVMVYKFHDDEHGEVVAEWCRPDLEPYLGLHYPSTDIPQASRFLFMKNKVRMICDCLAPSVEVVQDSRLAQPLSLAGSTLRSPHGCHAQYMANMGSIASLVMSVVVNEEDDEVVNDQPKGRKLWGLVVCHHASPRFVPFPLRYACEFLIQVFGVQMNKEVELAAQLREKHIFQTQTVLCDMLLRDAPVGIVTHSPNIMDLVKCGGAALIYKKKTWLLGVTPSEEQIWDLANWLIEHHSGSTGLSTDSLLEAGYPGASDLGDEVCGMAAVRIKANDFVFWFRSHTGKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSIQLILRGSLQDEVEDSKMIVNVPSGDGDGMQRVDELHIITSEMVRLIETAAVPILAIDSSGNINGWNSKATELTGLPVHQAVTMTLLDVVVVDSVDVMKNMLSLALRGIEDQNIELKLKTFGDQEKKGPVILVANACCSRDMNENIVGVCFVGQDVTGQRLIMDQYTHIQGDFVGIMRSPSALIPPIFMTNEDGQCLDWNDAMQNLSGLRREEALNRMLLGEVFTVNNFGCRVKDHDTLTKLRILLNKVVSGQEAEKLLFGFFDGQGNYVEALLSMTKRTNLEGRISGVFCFLHVASPELQYALQVQRISEEATADSLKKLAYIRREIINPLNGIKFMQSLMESSDLSKEQKQLLKSSSLCQQQLVKIVDDTDIESIEECYMDLNCVEFNLGEVLEAVISQVMILSQEQRVQIIHESAADVSSFYLYGDNLRLQQALADFLSNVIMFTPAFEGSSVTLKVTARKEHIGTKILIVHLEFRITHPAPGIPENLIREMFRKNRNISREGVGLFISHKLVKLMNGTVQYIREAERSSFIILVEFPLVCENDR 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10914209 10917912 + Conep08aG0140700.1 Cone8ag1368 443917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1368 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 977 1129 IPR036890 -
Cone8ag1368 1141 Gene3D - 219 578 IPR029016 -
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 1 38 - -
Cone8ag1368 1141 Pfam GAF domain 242 415 IPR003018 GO:0005515(InterPro)
Cone8ag1368 1141 ProSiteProfiles PAS repeat profile. 632 702 IPR000014 -
Cone8ag1368 1141 FunFam Phytochrome 628 759 - -
Cone8ag1368 1141 CDD PAS 643 749 IPR000014 -
Cone8ag1368 1141 CDD HATPase_Phy-like 1020 1133 IPR044767 -
Cone8ag1368 1141 Gene3D PAS domain 624 763 - -
Cone8ag1368 1141 SMART gaf_1 238 427 IPR003018 GO:0005515(InterPro)
Cone8ag1368 1141 Gene3D PAS domain 778 890 - -
Cone8ag1368 1141 Gene3D PAS domain 97 341 - -
Cone8ag1368 1141 PANTHER OS08G0260000 PROTEIN 18 1010 - -
Cone8ag1368 1141 Coils Coil 1 21 - -
Cone8ag1368 1141 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 238 407 IPR016132 -
Cone8ag1368 1141 SMART pas_2 634 700 IPR000014 -
Cone8ag1368 1141 SMART pas_2 764 834 IPR000014 -
Cone8ag1368 1141 PRINTS Phytochrome signature 635 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 532 551 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 338 359 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 153 175 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 747 767 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 253 272 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 654 669 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 727 744 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 565 583 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 447 467 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 FunFam Phytochrome 974 1135 - -
Cone8ag1368 1141 Gene3D - 422 595 IPR043150 -
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 1 16 - -
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 779 884 IPR035965 -
Cone8ag1368 1141 SUPERFAMILY GAF domain-like 218 414 - -
Cone8ag1368 1141 SUPERFAMILY GAF domain-like 425 603 - -
Cone8ag1368 1141 Pfam Phytochrome region 430 604 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PIRSF Phytochrome_conventional 20 1141 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cone8ag1368 1141 ProSitePatterns Phytochrome chromophore attachment site signature. 338 347 IPR013516 -
Cone8ag1368 1141 SMART HKATPase_4 1021 1135 IPR003594 -
Cone8ag1368 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1021 1134 IPR003594 -
Cone8ag1368 1141 Pfam PAS fold 90 205 IPR013654 GO:0006355(InterPro)
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 17 38 - -
Cone8ag1368 1141 FunFam Phytochrome 422 553 - -
Cone8ag1368 1141 Pfam His Kinase A (phospho-acceptor) domain 914 972 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 94 207 IPR035965 -
Cone8ag1368 1141 NCBIfam PAS domain S-box protein 639 751 IPR000014 -
Cone8ag1368 1141 ProSiteProfiles PAS repeat profile. 774 817 IPR000014 -
Cone8ag1368 1141 CDD PAS 776 887 IPR000014 -
Cone8ag1368 1141 Pfam PAS fold 635 749 IPR013767 GO:0006355(InterPro)
Cone8ag1368 1141 Pfam PAS fold 775 887 IPR013767 GO:0006355(InterPro)
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 638 745 IPR035965 -
Cone8ag1368 1141 CDD HisKA 914 964 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1368 1141 ProSiteProfiles Histidine kinase domain profile. 916 1137 IPR005467 -
Cone8ag1368 1141 Gene3D - 954 1129 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0806 Cone-Chr13:7423582 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone14ag0717 Cone-Chr14:3926212 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone15ag0729 Cone-Chr15:4161999 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone19ag0812 Cone-Chr19:6479343 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone12ag1314 Cone-Chr12:9931224 Cone8ag1368 Cone-Chr8:10914209 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1368 - - - 0.0