Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1368 ATGAAGAAGGAAAAAACAGAGAGGGAGGAATTGGAAGAAGGCAGTAGACAGATGTCTTCGAAGTCAACAAACAAGACGAATACAAACTGTTCCCGGAGCACCTCTGCTCGATCCAAACTTGGGGCCCACATGGTTGCTCAGACCCCTGTTGATGCAAAGCTCCATGTAGATTTCGAAGAATCCGAAAACCGTTTCGAGTACTCCACTTCAATAGATTTCAATACCTCCACTTATACTACCAATGTCCCCTCCTCCACTGTATCGTCTTATCTCCAGAAGATGCAAAGAGGAAGGCTAATTCAACCATTCGGTTGTATGATTGCAGTTGATGAAGAGAATTTCTCCGTTCTAGCTTACAGTGAAAATGCTCCTGAAATGTTGGACCTGGCCCCACATGCGGTTCCTAGTATTGAACAGAAAGAAGCACTTAGCTTCGGAACAGATGTTAGGTCCCTTTTTCGGCCTTCAGGCTCAGCTGCCTTGCAAAAAGCAGCCAATTTTAGAGATGTGAATCTTCTAAACCCATTATTACTTCATTGCAAAAACTCAGGTAAGCCCTTCTATGCAATTCTGCACAGAATCGATGTGGGTTTAGTCATAGATTTAGAGCCAGTAAATCCTGCAGATGTACCTGTAACAGCTGCCGGAGCGTTGAAATCGTATAAGCTTGCAGCCAATGCAATCTCTAGATTGCAATCCTTGCCTAGTGGAAATTTATTTATATTGTGTGATGTATTGGTTAAGGAAGTTAGTGATTTGATGGGTTACGATAGAGTAATGGTGTACAAATTTCACGACGATGAACATGGAGAAGTCGTAGCAGAATGGTGTAGGCCTGACTTGGAGCCTTATCTAGGTTTGCATTACCCGTCTACTGATATACCTCAAGCTTCTAGGTTTCTCTTTATGAAGAATAAGGTCAGGATGATATGTGATTGTTTAGCACCTTCAGTTGAAGTGGTTCAAGATAGTAGACTGGCTCAACCATTGAGTCTTGCGGGGTCCACTTTGAGGTCTCCTCACGGTTGTCATGCACAGTATATGGCTAACATGGGTTCTATTGCGTCTCTTGTAATGTCTGTCGTGGTAAATGAGGAAGATGATGAGGTGGTGAATGATCAGCCGAAGGGAAGAAAGCTATGGGGTCTAGTGGTTTGTCACCACGCAAGCCCTAGATTTGTTCCATTCCCTTTGAGATATGCTTGTGAGTTTCTGATTCAAGTCTTTGGAGTTCAAATGAACAAAGAGGTTGAATTGGCCGCTCAGTTGAGGGAAAAACATATTTTTCAAACTCAAACCGTCCTTTGCGATATGCTTCTTAGGGATGCTCCAGTTGGAATCGTCACTCATTCTCCGAATATAATGGATTTAGTAAAGTGTGGTGGAGCCGCCCTTATTTATAAGAAGAAAACTTGGTTGCTTGGAGTCACTCCAAGTGAGGAACAAATCTGGGATTTAGCCAATTGGCTTATTGAACACCATAGTGGGAGCACGGGATTAAGTACGGATAGTCTTCTGGAAGCTGGCTATCCAGGTGCTTCTGATCTAGGCGATGAGGTTTGTGGAATGGCTGCCGTTAGAATTAAGGCTAATGATTTTGTCTTTTGGTTCCGGTCTCACACAGGGAAGGAAATCAAGTGGGGTGGAGCCAAACACGACCCAGACGACAAAGATGATGGAAGGAAAATGCACCCGAGATCGTCTTTCAAGGCTTTTTTAGAAGTGGTGAAGAGGCGTAGTCAACCTTGGGAGGACGTGGAAATGGATGCTATTCATTCGATTCAGTTGATATTGAGAGGCTCTTTGCAAGATGAGGTGGAGGATTCTAAGATGATTGTGAATGTCCCTTCAGGTGATGGTGATGGGATGCAGAGAGTGGATGAGTTGCACATTATAACAAGCGAAATGGTTCGTTTGATAGAGACAGCTGCTGTCCCCATCTTGGCCATAGATTCTTCGGGTAATATTAATGGGTGGAATTCCAAAGCTACTGAATTAACCGGATTGCCTGTCCATCAAGCCGTTACCATGACCTTGCTTGATGTTGTTGTGGTTGATTCGGTTGATGTCATGAAGAACATGCTCTCCTTGGCTTTGCGAGGTATAGAAGACCAAAACATTGAATTGAAACTGAAAACATTTGGGGATCAGGAAAAAAAAGGGCCCGTGATCTTGGTAGCTAATGCGTGTTGTAGCCGAGACATGAACGAAAACATTGTGGGGGTTTGCTTTGTTGGCCAGGATGTTACGGGACAAAGACTGATTATGGACCAATATACGCATATCCAAGGTGATTTTGTCGGGATTATGCGCAGCCCGTCTGCTCTTATCCCTCCGATTTTTATGACCAATGAGGATGGTCAATGCTTGGATTGGAATGATGCGATGCAAAATTTGTCGGGTTTGAGAAGGGAAGAGGCGCTAAACCGGATGCTTCTGGGAGAGGTTTTTACAGTCAACAATTTTGGCTGTCGGGTCAAAGACCATGACACTTTGACTAAGCTTAGAATACTATTGAACAAGGTTGTTTCCGGCCAGGAAGCGGAGAAATTGTTGTTCGGGTTTTTTGATGGGCAGGGAAACTATGTTGAAGCATTACTATCGATGACCAAACGGACTAATTTGGAAGGAAGAATTAGTGGGGTTTTCTGCTTCTTGCATGTGGCAAGTCCTGAGCTTCAATATGCTTTGCAGGTTCAAAGAATATCAGAAGAAGCCACTGCTGATAGCTTGAAGAAATTGGCATATATTAGACGGGAAATTATCAATCCTTTGAATGGGATTAAGTTTATGCAGAGTCTAATGGAATCTTCTGATTTAAGCAAAGAGCAAAAGCAGCTATTGAAATCTAGCTCATTGTGTCAACAGCAGTTAGTCAAGATTGTAGACGACACTGATATCGAAAGTATCGAAGAATGTTACATGGATTTGAACTGTGTCGAGTTTAACCTTGGGGAAGTTCTAGAAGCTGTCATTAGCCAAGTAATGATTTTGAGCCAAGAACAGCGGGTCCAGATCATACACGAGTCAGCTGCTGATGTGTCGTCATTCTACTTGTACGGAGACAATTTGAGGCTTCAACAAGCACTTGCAGATTTCTTGAGCAACGTGATCATGTTCACACCTGCATTCGAAGGATCATCCGTTACGCTCAAAGTGACTGCAAGGAAGGAACATATAGGAACGAAAATTCTCATCGTCCATCTCGAGTTTAGGATCACTCATCCAGCACCCGGGATTCCGGAGAATTTAATCCGAGAGATGTTCAGGAAAAACCGTAATATATCGAGGGAAGGGGTGGGCCTATTTATAAGCCATAAACTTGTGAAGCTAATGAATGGGACAGTGCAGTATATTAGAGAAGCAGAAAGATCATCATTTATCATCCTTGTTGAATTTCCATTGGTCTGCGAAAACGACCGTTGA 3426 43.26 MKKEKTEREELEEGSRQMSSKSTNKTNTNCSRSTSARSKLGAHMVAQTPVDAKLHVDFEESENRFEYSTSIDFNTSTYTTNVPSSTVSSYLQKMQRGRLIQPFGCMIAVDEENFSVLAYSENAPEMLDLAPHAVPSIEQKEALSFGTDVRSLFRPSGSAALQKAANFRDVNLLNPLLLHCKNSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAANAISRLQSLPSGNLFILCDVLVKEVSDLMGYDRVMVYKFHDDEHGEVVAEWCRPDLEPYLGLHYPSTDIPQASRFLFMKNKVRMICDCLAPSVEVVQDSRLAQPLSLAGSTLRSPHGCHAQYMANMGSIASLVMSVVVNEEDDEVVNDQPKGRKLWGLVVCHHASPRFVPFPLRYACEFLIQVFGVQMNKEVELAAQLREKHIFQTQTVLCDMLLRDAPVGIVTHSPNIMDLVKCGGAALIYKKKTWLLGVTPSEEQIWDLANWLIEHHSGSTGLSTDSLLEAGYPGASDLGDEVCGMAAVRIKANDFVFWFRSHTGKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSIQLILRGSLQDEVEDSKMIVNVPSGDGDGMQRVDELHIITSEMVRLIETAAVPILAIDSSGNINGWNSKATELTGLPVHQAVTMTLLDVVVVDSVDVMKNMLSLALRGIEDQNIELKLKTFGDQEKKGPVILVANACCSRDMNENIVGVCFVGQDVTGQRLIMDQYTHIQGDFVGIMRSPSALIPPIFMTNEDGQCLDWNDAMQNLSGLRREEALNRMLLGEVFTVNNFGCRVKDHDTLTKLRILLNKVVSGQEAEKLLFGFFDGQGNYVEALLSMTKRTNLEGRISGVFCFLHVASPELQYALQVQRISEEATADSLKKLAYIRREIINPLNGIKFMQSLMESSDLSKEQKQLLKSSSLCQQQLVKIVDDTDIESIEECYMDLNCVEFNLGEVLEAVISQVMILSQEQRVQIIHESAADVSSFYLYGDNLRLQQALADFLSNVIMFTPAFEGSSVTLKVTARKEHIGTKILIVHLEFRITHPAPGIPENLIREMFRKNRNISREGVGLFISHKLVKLMNGTVQYIREAERSSFIILVEFPLVCENDR 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10914209 10917912 + Conep08aG0140700.1 Cone8ag1368 443917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1368 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 977 1129 IPR036890 -
Cone8ag1368 1141 Gene3D - 219 578 IPR029016 -
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 1 38 - -
Cone8ag1368 1141 Pfam GAF domain 242 415 IPR003018 GO:0005515(InterPro)
Cone8ag1368 1141 ProSiteProfiles PAS repeat profile. 632 702 IPR000014 -
Cone8ag1368 1141 FunFam Phytochrome 628 759 - -
Cone8ag1368 1141 CDD PAS 643 749 IPR000014 -
Cone8ag1368 1141 CDD HATPase_Phy-like 1020 1133 IPR044767 -
Cone8ag1368 1141 Gene3D PAS domain 624 763 - -
Cone8ag1368 1141 SMART gaf_1 238 427 IPR003018 GO:0005515(InterPro)
Cone8ag1368 1141 Gene3D PAS domain 778 890 - -
Cone8ag1368 1141 Gene3D PAS domain 97 341 - -
Cone8ag1368 1141 PANTHER OS08G0260000 PROTEIN 18 1010 - -
Cone8ag1368 1141 Coils Coil 1 21 - -
Cone8ag1368 1141 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 238 407 IPR016132 -
Cone8ag1368 1141 SMART pas_2 634 700 IPR000014 -
Cone8ag1368 1141 SMART pas_2 764 834 IPR000014 -
Cone8ag1368 1141 PRINTS Phytochrome signature 635 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 532 551 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 338 359 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 153 175 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 747 767 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 253 272 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 654 669 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 727 744 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 565 583 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PRINTS Phytochrome signature 447 467 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 FunFam Phytochrome 974 1135 - -
Cone8ag1368 1141 Gene3D - 422 595 IPR043150 -
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 1 16 - -
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 779 884 IPR035965 -
Cone8ag1368 1141 SUPERFAMILY GAF domain-like 218 414 - -
Cone8ag1368 1141 SUPERFAMILY GAF domain-like 425 603 - -
Cone8ag1368 1141 Pfam Phytochrome region 430 604 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cone8ag1368 1141 PIRSF Phytochrome_conventional 20 1141 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cone8ag1368 1141 ProSitePatterns Phytochrome chromophore attachment site signature. 338 347 IPR013516 -
Cone8ag1368 1141 SMART HKATPase_4 1021 1135 IPR003594 -
Cone8ag1368 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1021 1134 IPR003594 -
Cone8ag1368 1141 Pfam PAS fold 90 205 IPR013654 GO:0006355(InterPro)
Cone8ag1368 1141 MobiDBLite consensus disorder prediction 17 38 - -
Cone8ag1368 1141 FunFam Phytochrome 422 553 - -
Cone8ag1368 1141 Pfam His Kinase A (phospho-acceptor) domain 914 972 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 94 207 IPR035965 -
Cone8ag1368 1141 NCBIfam PAS domain S-box protein 639 751 IPR000014 -
Cone8ag1368 1141 ProSiteProfiles PAS repeat profile. 774 817 IPR000014 -
Cone8ag1368 1141 CDD PAS 776 887 IPR000014 -
Cone8ag1368 1141 Pfam PAS fold 635 749 IPR013767 GO:0006355(InterPro)
Cone8ag1368 1141 Pfam PAS fold 775 887 IPR013767 GO:0006355(InterPro)
Cone8ag1368 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 638 745 IPR035965 -
Cone8ag1368 1141 CDD HisKA 914 964 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1368 1141 ProSiteProfiles Histidine kinase domain profile. 916 1137 IPR005467 -
Cone8ag1368 1141 Gene3D - 954 1129 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1368 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0806 Cone-Chr13:7423582 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone14ag0717 Cone-Chr14:3926212 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone15ag0729 Cone-Chr15:4161999 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone19ag0812 Cone-Chr19:6479343 Cone8ag1368 Cone-Chr8:10914209 0 dispersed
Cone12ag1314 Cone-Chr12:9931224 Cone8ag1368 Cone-Chr8:10914209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0858 . 19 1108 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1384.4
Cone12ag0821 . 1 1107 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1382.5
Cone6ag0342 . 23 1008 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1354.0
Cone9ag0376 . 23 1002 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.6
Cone12ag1329 . 264 1193 Histidine Kinase Gene Family AT2G01830 54.7 4.3e-282 968.4
Cone15ag0619 . 88 1043 Histidine Kinase Gene Family AT2G01830 54.4 2.8e-281 965.7
Cone14ag0613 . 88 1042 Histidine Kinase Gene Family AT2G01830 54.2 6.2e-281 964.5
Cone8ag1386 . 265 1191 Histidine Kinase Gene Family AT2G01830 54.3 9.8e-279 957.2
Cone4ag1716 . 1 1005 Histidine Kinase Gene Family AT5G10720 56.9 1.7e-290 996.1
Cone7ag1634 . 1 1007 Histidine Kinase Gene Family AT5G10720 56.1 1.4e-284 976.5
Cone13ag0806 . 1 1121 Histidine Kinase Gene Family AT1G09570 77.6 0.0e+00 1767.7
Cone19ag0812 . 1 1108 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1748.4
Cone12ag1314 . 21 1122 Histidine Kinase Gene Family AT1G09570 57.3 0.0e+00 1277.3
Cone8ag1368 . 35 1132 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1267.3
Cone14ag0717 . 31 1119 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1177.9
Cone15ag0729 . 31 951 Histidine Kinase Gene Family AT1G09570 56.0 1.7e-305 1046.2
Cone14ag0717 . 5 1060 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1662.5
Cone15ag0729 . 10 966 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1515.7
Cone8ag1368 . 45 1072 Histidine Kinase Gene Family AT2G18790 54.6 0.0e+00 1113.2
Cone12ag1314 . 33 1062 Histidine Kinase Gene Family AT2G18790 55.0 0.0e+00 1112.1
Cone13ag0806 . 20 1056 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1076.6
Cone19ag0812 . 20 1043 Histidine Kinase Gene Family AT2G18790 51.6 7.2e-312 1067.4
Cone12ag1314 . 19 1126 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1410.6
Cone8ag1368 . 29 1136 Histidine Kinase Gene Family AT5G35840 62.9 0.0e+00 1409.0
Cone14ag0717 . 13 1121 Histidine Kinase Gene Family AT5G35840 52.0 0.0e+00 1127.5
Cone13ag0806 . 7 1115 Histidine Kinase Gene Family AT5G35840 50.9 0.0e+00 1106.3
Cone19ag0812 . 7 1102 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1103.2
Cone15ag0729 . 13 951 Histidine Kinase Gene Family AT5G35840 54.3 2.7e-295 1012.3
Cone14ag0717 . 8 1121 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1692.6
Cone15ag0729 . 8 971 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1467.6
Cone12ag1314 . 33 1125 Histidine Kinase Gene Family AT4G16250 53.8 0.0e+00 1151.7
Cone8ag1368 . 45 1135 Histidine Kinase Gene Family AT4G16250 53.5 0.0e+00 1150.6
Cone13ag0806 . 19 1116 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.6
Cone19ag0812 . 19 1103 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1107.4
Cone14ag0717 . 12 1119 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1272.7
Cone15ag0729 . 12 949 Histidine Kinase Gene Family AT4G18130 60.8 0.0e+00 1108.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40