Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1383 ATGGCCACCTCTGCCCTTCAACAGTCTGCATTTTCCGGCCAGACCACCTTGAAACAGTCCAATGAGCTCATCCGCAAAATCGGAAACTTCAATGGGGGCCGTACCACCATGAGGAGGACCATCAAGAGTGCTCCCCAAAGCATCTGGTATGGACCAGACCGCCCAAAGTACTTGGGCCCATTCTCTGAACAGACCCCATCATACCTAACCGGCGAGTTCCCCGGTGACTATGGATGGGATACAGCCGGACTATCAGCTGACCCTGAGACCTTTTCCAAGAACAGAGAGCTCGAGGTGATCCACAGCAGGTGGGCCATGCTTGGTGCTCTAGGATGTGTCTTCCCAGAAGTTCTTTCAAAGAACGGTGTCAAGTTCGGTGAAGCAGTCTGGTTCAAGGCTGGAGCTCAGATCTTCTCAGAGGGTGGCCTTGACTACCTAGGCAACCCCAACTTGGTTCATGCTCAGAGCATCCTAGCAATCTGGGCCGTCCAGGTGGTGCTTATGGGATTCATTGAAGGTTACAGAGTTGGAGGCGGGCCCCTCGGTGAAGGGTTGGACCCACTTTACCCAGGAGGTGCTTTTGACCCTCTTGGATTGGCTGATGATCCTGAAGCTTTTGCTGAATTGAAGGTTAAGGAACTCAAGAATGGAAGACTTGCAATGTTTTCCATGTTTGGATTCTTCGTTCAAGCTATCGTAACTGGAAAGGGTCCAATTGAGAACCTTTTTGACCACGTAGCTGACCCAGTAGCCAACAATGCTTGGGCATATGCTACTAACTTTGTCCCCGGAAAATGA 798 51.13 MATSALQQSAFSGQTTLKQSNELIRKIGNFNGGRTTMRRTIKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10959263 10960520 + Conep08aG0142200.1 Cone8ag1383 443932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1383 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cone8ag1383 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cone8ag1383 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cone8ag1383 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Cone8ag1383 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0112 Cone-Chr6:539985 Cone8ag1383 Cone-Chr8:10959263 1.52E-123 dispersed
Cone8ag0754 Cone-Chr8:7634588 Cone8ag1383 Cone-Chr8:10959263 4.41E-39 dispersed
Cone8ag1383 Cone-Chr8:10959263 Cone9ag0912 Cone-Chr9:4480977 4.62E-151 dispersed
Cone8ag1383 Cone-Chr8:10959263 Cone6ag0906 Cone-Chr6:4652083 3.83E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1383 K08913 - mdm:103442984 514.612