Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1386 ATGAGCTGTTCTCCTAGAGGTGGGGTTCTTCTGAAGCTTTCAAGGCTGTTAGTGAAGATTCATCATAAGTGGGCTTTACTGAGGATGTCTCTGAATTGCAAGTCCCCTTGTTCTAATGGCAGATTGAAGTCTGGGTTTAAGTTGAAGAAAGCAAGTGAACATTTTCATGGCCATAACACTAACTCTGTAGCAATATGGAGAAAGCTTCTTTCTGTGTGGCTCTTAGGAGTGGTTATAGTTTTGGGCATTTGGTTTTTCTGGAATTTGTATGATAATGGAATCAAAATGAAGAATTCAGGCTCATGTGACGAAAAAGCTCGAATCTTGTTTGAGCATTTCAATGTCAGTAAGAATCATCTTCGTGCTCTATCATCTGACTTTCCTGAATCAGATCAGGTATTATGTTCAAACAAGCAAGCTTTACAAAAGCAAAGAACATGGCCCCCAGAATCTGAAGATTCCAATGAAGAGCAGTGCCCTGTTCGAGATGAGAATCTCTCTTTCATTTCAAATGTATCATACTGTGTGAAAGAGCATTACAGAAGTTTGTGTAGTTTTGTAATAGGAGGTTTATTGTTCCTTACTGGAGTGATAATAGGCAGTAAAATGTCTGATTTTTATTCAAAAAAATTGTGGAGAAAAGACAACGAGCAGGAGGTGGTTGTTATTCGGCCGCCTGTTCAGCCTCCAGGTCCGGCGCAGAAGAAGCAGCACCACTCACTGGAAGGCCCTGCTAGATGTGGTGGTGGAAACTGGAGAATGAAACTGCTGGTAGTAGGTGTGACAGCTGGGATTGTTGGCTCCATTTGGATTTTCATGCACATGAATAACGAAAATGTTTCCAGAAGAGTCAAAACGCTTGCCAGTATGTGTGATGAGCGGGCCCGGATGTTACAGGATCAGTTCAATGTCAGCATGAACCATGTTCATGCTTTGGCGGTTCTTGTCTCTACTTTCCACCACAGAAAGCACCCTTCTGCTATGGATCAGAAAACATTTGGTGAATATACGGAGGGTACAGCATTTGAGAGACCTCTGACTAGTGGTGTGGCTTATGCCTTAAAAGTAAAGCACACAGAAAGGGAGAAATTTGAGAAGAGGCATGGGTGGACAATAAAGAAAATGGGAACAGAGGACCAAGCCCTAGTTCAAGATTGTTTTCCGGAGAATTTGGATCCAGCTCCCATTCAAGACGAGTATGCACCGGTTATATTTTCTCAAGAAACTGTTTCTCATATCGTCTCTATTGATATGATGTCAGGAAAGGAAGACCGTGAAAACATTTTACGTGCAAGGGCATCTGGGAAGGGAGTTCTAACATCTCCTTTTATGCTATTGAAATCCAATCACTTGGGCGTTGTGCTCACCTTTGCTGTCTATGATACTAAACTTTCTCCAGAAGCTACTCCTGAGCAACGGATTGAATCTACTGTTGGGTATCTGGGAGCATCATATGATGTCCCCTCATTGGTTGAGAAGCTTCTCCATCAGCTTGCTAGCAAGCAAACAATTTTCGTGAATGTTTATGATACAACTAATGCATCTGATCCCATCAATATGTATGGACCGGATGTGATTGATACTGGTCTAGTGCACGTTAGCAGCCTTGATTTTGGAGATCCACAAAGAAAGCATGAGATGCATTGCAGATTTACGCAGAAGCCTCCTATACCCTGGACAGTGATTAACTCATCACTTGGAGTTCTTGTCATTACTTTGCTTGTGGGCCACATCTTTCATGCAGCAATAATTAGAATTGCAAAAGTGGAGAATGACTATAGGGAGATGATGGAGCTCAAAGTCCGTGCCGAAGCTGCTGATGTGGCAAAATCTCAGTTTCTTGCAACGGTTTCTCACGAGATCAGAACACCAATGAACGGTGTTTTAGGGATGCTGCAAATGCTCATGGACACTGACCTTGATCCAAACCAATTGGACTATGCTCATACGGCTTATGATAGTGGCAAAGATCTGATTTCCCTTATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAACTTGAAGCCGTACCTTTCAATCTACGTGTGATACTCGATAATGTTCTCTCGCTTTTCTCAGGAAAATCTAATGAGAAAGGGATCGAGTTGGCTGCTTATGTCTCGAATCTGGTGCCTGAGATTCTCATTGGTGATCCTTCTCGTTTCCAGCAAATAATTACAAACCTTATAGGAAATTCCATAAAGTTCACTCATGACAAAGGGCATATATTTATCTCCGTACATCTAGCAGACAATGTGAGGGGCCCACGTGATGAAATGGACAAAGTGCTAAGGCAAGGCTCGGATTTTGTTCAAGAAGACGCATCAACCAAAACTTATAACTCACTGAGTGGATCCCCCGTGGTTGACAGATGGAAAAGTTGGGAACATTTTAAAATCTTTAGTAAAAAAGATGCAAAGGATGAAGATGAAATCAAATTACTAGTAACGGTTGAGGATACAGGTGTAGGGATTCCTCTATATGCACAAAGCCGGATCTTCACGCCTTTCATGCAAGCTGATAGTTCCACTTCTCGGACCTATGGTGGGACTGGAATAGGACTGAGCATCAGCAAATGTCTGGTAGATCTCATGGGTGGGGAGATAGGATTTGTGAGCGAGCCTGGAACTGGTAGCACTTTCTCATTTACTGGATCTTTCCGGAAAGAAACTTCAACTTCTCTACATATAAACAAGCCACAATATGATTCAATTCTGATCGATTTCAAAGGACTGAGGGCAGTGATAATTGATAATAGAAGCATTCGGGCTGAGGTCACCAAATATCATCTACAGAGATTGGGAATCTCTGTAGATATAGTTTCGAGTCTAGAATCTTCATCCCCAAGTTCCTTCACCAATGTATCGGTTGTTCTTTTCGACAAGGATGTATGGGATGAGGAAAAATGTCTAAAACTTCATTGTTTGCTCAAAGAGCATCCAAATGAGCCAAAATATTTTCTCTTGGCTACATCTATTAGCTCACAAGAACAGAATGAACTCAAGTCAGTTGGGTATATAAACGAGATATTGGTAAAACCGCTTCGGTTAAGTGTCTTGATTGGATGCTTCCAGGAAATCCTCGGAAATGGTAAGAAAAGGCAAGACTATAGGAAAAAGCCATCTCCTGTCGGGAAATTACTTAGAGAAAAGCGAATATTAGTAGTTGATGACAATGCAGTTAATAGAAGAGTAGCAGAAGGAGCTCTAAAGAAATACGGAGCCATTGTTACTTGTGTAGAAAGTGGGCGAGCTGCTCTTTCCATGCTCAAGCCTCCGCATTCATTTGACGCATGCTTCATGGATCTCCAAATGCCAGAGATGGATGGGTTTGAAGCGACAAGGCAGACTAGATGTTTAGAAAGGTTGGTAAATAAAATAATTGAATCAGGAGAGGCTTCAATTGAGAAGTTTGGAAATATGGCCCATTGGCACACGCCTATTCTGGCCATGACAGCTGATGTAATACAGGCTACGAATGAAGAGTGCATTAAGTGTGGGATGGATGGTTATGTATCTAAACCCTTTGATGAAGAACAGCTTTATTCAGCAGTCGCACAATTCCTTGAGTCTGATTGA 3591 41.88 MSCSPRGGVLLKLSRLLVKIHHKWALLRMSLNCKSPCSNGRLKSGFKLKKASEHFHGHNTNSVAIWRKLLSVWLLGVVIVLGIWFFWNLYDNGIKMKNSGSCDEKARILFEHFNVSKNHLRALSSDFPESDQVLCSNKQALQKQRTWPPESEDSNEEQCPVRDENLSFISNVSYCVKEHYRSLCSFVIGGLLFLTGVIIGSKMSDFYSKKLWRKDNEQEVVVIRPPVQPPGPAQKKQHHSLEGPARCGGGNWRMKLLVVGVTAGIVGSIWIFMHMNNENVSRRVKTLASMCDERARMLQDQFNVSMNHVHALAVLVSTFHHRKHPSAMDQKTFGEYTEGTAFERPLTSGVAYALKVKHTEREKFEKRHGWTIKKMGTEDQALVQDCFPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFMLLKSNHLGVVLTFAVYDTKLSPEATPEQRIESTVGYLGASYDVPSLVEKLLHQLASKQTIFVNVYDTTNASDPINMYGPDVIDTGLVHVSSLDFGDPQRKHEMHCRFTQKPPIPWTVINSSLGVLVITLLVGHIFHAAIIRIAKVENDYREMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDPNQLDYAHTAYDSGKDLISLINEVLDQAKIESGRLELEAVPFNLRVILDNVLSLFSGKSNEKGIELAAYVSNLVPEILIGDPSRFQQIITNLIGNSIKFTHDKGHIFISVHLADNVRGPRDEMDKVLRQGSDFVQEDASTKTYNSLSGSPVVDRWKSWEHFKIFSKKDAKDEDEIKLLVTVEDTGVGIPLYAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTFSFTGSFRKETSTSLHINKPQYDSILIDFKGLRAVIIDNRSIRAEVTKYHLQRLGISVDIVSSLESSSPSSFTNVSVVLFDKDVWDEEKCLKLHCLLKEHPNEPKYFLLATSISSQEQNELKSVGYINEILVKPLRLSVLIGCFQEILGNGKKRQDYRKKPSPVGKLLREKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGRAALSMLKPPHSFDACFMDLQMPEMDGFEATRQTRCLERLVNKIIESGEASIEKFGNMAHWHTPILAMTADVIQATNEECIKCGMDGYVSKPFDEEQLYSAVAQFLESD 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10973791 10979270 + Conep08aG0142500.1 Cone8ag1386 443935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1386 1196 SMART HisKA_10 609 674 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1386 1196 SUPERFAMILY CheY-like 1053 1194 IPR011006 -
Cone8ag1386 1196 ProSiteProfiles Histidine kinase domain profile. 616 893 IPR005467 -
Cone8ag1386 1196 PRINTS Bacterial sensor protein C-terminal signature 818 832 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag1386 1196 PRINTS Bacterial sensor protein C-terminal signature 836 846 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag1386 1196 PRINTS Bacterial sensor protein C-terminal signature 853 871 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag1386 1196 PRINTS Bacterial sensor protein C-terminal signature 877 890 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone8ag1386 1196 Gene3D - 275 327 - -
Cone8ag1386 1196 Gene3D - 93 127 - -
Cone8ag1386 1196 Pfam His Kinase A (phospho-acceptor) domain 609 674 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1386 1196 FunFam Histidine kinase 4 581 672 - -
Cone8ag1386 1196 Gene3D CHASE domain 328 555 IPR042240 -
Cone8ag1386 1196 PANTHER TWO-COMPONENT HISTIDINE KINASE 256 1192 IPR050956 -
Cone8ag1386 1196 SMART HKATPase_4 721 893 IPR003594 -
Cone8ag1386 1196 Pfam Response regulator receiver domain 1057 1138 IPR001789 GO:0000160(InterPro)
Cone8ag1386 1196 ProSiteProfiles Response regulatory domain profile. 917 1032 IPR001789 GO:0000160(InterPro)
Cone8ag1386 1196 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 816 888 IPR003594 -
Cone8ag1386 1196 Gene3D - 581 672 - -
Cone8ag1386 1196 SMART REC_2 1055 1189 IPR001789 GO:0000160(InterPro)
Cone8ag1386 1196 Coils Coil 586 606 - -
Cone8ag1386 1196 ProSiteProfiles CHASE domain profile. 324 548 IPR006189 -
Cone8ag1386 1196 CDD HisKA 609 670 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1386 1196 Gene3D - 1054 1196 - -
Cone8ag1386 1196 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 594 675 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone8ag1386 1196 CDD HATPase_EvgS-ArcB-TorS-like 726 888 - -
Cone8ag1386 1196 ProSiteProfiles Response regulatory domain profile. 1056 1193 IPR001789 GO:0000160(InterPro)
Cone8ag1386 1196 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 663 888 IPR036890 -
Cone8ag1386 1196 CDD REC_hyHK_CKI1_RcsC-like 1057 1189 - -
Cone8ag1386 1196 Pfam CHASE domain 327 521 IPR006189 -
Cone8ag1386 1196 Gene3D - 673 895 IPR036890 -
Cone8ag1386 1196 SMART CHASE_2 324 523 IPR006189 -
Cone8ag1386 1196 FunFam Histidine kinase 4 328 555 - -
Cone8ag1386 1196 SUPERFAMILY CheY-like 912 1044 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0613 Cone-Chr14:3053568 Cone8ag1386 Cone-Chr8:10973791 0 dispersed
Cone15ag0619 Cone-Chr15:3222099 Cone8ag1386 Cone-Chr8:10973791 0 dispersed
Cone6ag0342 Cone-Chr6:1622438 Cone8ag1386 Cone-Chr8:10973791 0 dispersed
Cone8ag1386 Cone-Chr8:10973791 Cone9ag0376 Cone-Chr9:1690632 0 dispersed
Cone12ag1329 Cone-Chr12:10018207 Cone8ag1386 Cone-Chr8:10973791 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46732 PF14226 DIOX_N 6.80E-16 CL0029 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1386 K14489 - vvi:100263145 1507.66