Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1387 ATGGTTTCTTCAGGGAGCTGTGTGCAGCAGGAAATCGCTCCTAGTAAATTAGAGCAGGAACATAGATCTAATAATGGAAACCGTGCCTCTAAGGAGATTCCTAGTAATGAAGTAAATGTGTCACAATCAGATCAAAAAGGGAAGTCTCAAGCCATGGTCGTGGTACCTGAGAAAGCCGTGCAAGAGCCTAATGCTCTGCAATCAGGCCAGAAAGGAAACACTCCATCTAAAATACGGGAGAAAGTATCAGAGGATGGATATAACTGGCGAAAATATGGTCAAAAACTTGTCAAGGGGAATGAGTTTGTTAGGAGTTATTATAAATGCACTCATCCAAATTGCCAGGTGAAAAAGCAATTGGAATGCTCACATGAAGGGCAGATTACAGATACTATTTACTTCGGTCATCATGATCATCCTAAACATCAACTAGTTAACGTCCCAGTAGCTGTTGGATTTGTTGTGTCCATAGTTGATGAAAAACCAGATGAGCCTTCTTCAACTAGTGTTGAAGAAAAATCATCCATTGCAAATAACCAGACACCTCATAAAACTGAGCAAGTAGATGCCCACCCTCCACCACCAGCCATCGATGATGTCAAAGCTGAACCTTTACAATCGGTTAGGATTAGGGATGATATTGACCATTGTGATGCTTCAGACTCGAAACGGCAGAAGAAGGGATATCGGAATCCTGAAACTCAAGCAGATAAGCCAAATGTTGAACAGCATGTTGTTCAGACTCTCAGCGAGGTCGATTTTGTGAATGATGGATACCGCTGGCGCAAATATGGGCAGAAATTAGTGAAAGGAAATCTAAATCCTAGAAGTTACTATAGATGTTCGACTCCTGGATGTCCTGCTAAGAAGCACGTGGAGAGATCATCAAATGATCCAAAGCTTGTTATAACCATGTATGATGGACAACACGACCATGATATGCCTCCAGCCAGGACTGTCATGCACAACACAACTGGGCCAACCAGCACGACAGCCCATAGTAGTGGGGCCCAAACAAAATCGGATGATCAAAAGGATCAAACTGTTGTTCCTACTGCAGTTCCCAGTAGTAATTCGGGCCCTGATGGAGAAGTTAACGAACCGAATGTAGTGTCTACTGATATCAGGTTAGTAGTGTCTGATAATTCAGGTGCTGTGAATGGAAAAAGTGATAAGGTGAAGGCCGAGATAAGAGCCAAATCGGAGCGACAGCAATTGTGGTGCGATAGTAGTTCATGA 1239 43.02 MVSSGSCVQQEIAPSKLEQEHRSNNGNRASKEIPSNEVNVSQSDQKGKSQAMVVVPEKAVQEPNALQSGQKGNTPSKIREKVSEDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCQVKKQLECSHEGQITDTIYFGHHDHPKHQLVNVPVAVGFVVSIVDEKPDEPSSTSVEEKSSIANNQTPHKTEQVDAHPPPPAIDDVKAEPLQSVRIRDDIDHCDASDSKRQKKGYRNPETQADKPNVEQHVVQTLSEVDFVNDGYRWRKYGQKLVKGNLNPRSYYRCSTPGCPAKKHVERSSNDPKLVITMYDGQHDHDMPPARTVMHNTTGPTSTTAHSSGAQTKSDDQKDQTVVPTAVPSSNSGPDGEVNEPNVVSTDIRLVVSDNSGAVNGKSDKVKAEIRAKSERQQLWCDSSS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10979428 10982790 - Conep08aG0142600.1 Cone8ag1387 443936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1387 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 341 IPR044810 GO:0003700(InterPro)
Cone8ag1387 412 MobiDBLite consensus disorder prediction 169 186 - -
Cone8ag1387 412 MobiDBLite consensus disorder prediction 373 387 - -
Cone8ag1387 412 FunFam WRKY transcription factor 73 143 - -
Cone8ag1387 412 ProSiteProfiles WRKY domain profile. 78 142 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 Pfam WRKY DNA -binding domain 256 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 Pfam WRKY DNA -binding domain 84 140 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 MobiDBLite consensus disorder prediction 309 412 - -
Cone8ag1387 412 FunFam WRKY transcription factor 241 316 - -
Cone8ag1387 412 SUPERFAMILY WRKY DNA-binding domain 247 315 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 MobiDBLite consensus disorder prediction 1 79 - -
Cone8ag1387 412 MobiDBLite consensus disorder prediction 28 49 - -
Cone8ag1387 412 MobiDBLite consensus disorder prediction 204 233 - -
Cone8ag1387 412 SUPERFAMILY WRKY DNA-binding domain 80 141 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 SMART WRKY_cls 255 314 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 SMART WRKY_cls 83 141 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 ProSiteProfiles WRKY domain profile. 250 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 MobiDBLite consensus disorder prediction 161 240 - -
Cone8ag1387 412 Gene3D WRKY domain 240 316 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 Gene3D WRKY domain 71 142 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag1387 412 MobiDBLite consensus disorder prediction 321 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1387 Cone-Chr8:10979428 Cone9ag0026 Cone-Chr9:128238 1.15E-70 dispersed
Cone12ag1330 Cone-Chr12:10026135 Cone8ag1387 Cone-Chr8:10979428 8.56E-239 wgd
Cone14ag1206 Cone-Chr14:9812542 Cone8ag1387 Cone-Chr8:10979428 4.14E-63 wgd
Cone15ag1223 Cone-Chr15:9724224 Cone8ag1387 Cone-Chr8:10979428 7.15E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46733 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1387 K18834 - vvi:100256306 367.851