Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1426 ATGTGCTGGACCAGAGGGCAAGTCATTGGCCGCGGCTCATCAGCCGCCGTATCGGTCGCCATCAATAATCTTTCCGGTGAAGTCCTCGCAGTCAAGTCCGCGGAGCTCTCCCACTCCCCCTTCTTACAAAGAGAGCAAAAAATCCTCTCATCCTTAAACTCCCCTCACATAGTTAGCTACAAGGGGTGTGACATTTCCAGAGAAAACAACAAGCTCATCTACAATCTCTTTATGGAGTACTTTCCTGGTGGCACGCTTTCCGATCAAATCCGAAGGAAGAATCTCCTGCTTGACGAATCGCTGATCGGAATCTACACACATCAAATCGTACAAGGACTCAAGTACTTGCACGCCCAAGGAATTGTACATTGTGACATTAAGGGTAGCAATATTTTGATCGGACAAGACGGTGTGAAAATTGCTGATTTCGGATGCTCCAAAATTTTACCGGTCGACCCGGAAGTGGGAATTGGCAGTGGAACCCCTATGTTTATGGCGCCTGAGGTAGCACGTGGGGAAGAACAGGGGTGCCCCTGTGACATATGGGCTCTCGGGTGTACAATTATTGAAATGGCCAGTGGTAAATTGCCATGGTCTGATAATTCTGGTGATCCGGTTTCGGTTCTTTACCGGATTGGATGTTCCGGGGAATGTCCGGAGATTCCGAGATGTCTTTCCGAGCAAGCGAAGGATTTTGTGGAGAAGTGCTTGGTGAGGGATCAGAGAGAGAGGTGGACGGCTAGTCAACTTTTGAAGCATCCATTTCTTGAAGAGATCAACTATAACAATAACTTGAATGGAAGGAAGATAATCCAAGAATCTTATTCAACTTCGTCTCCTACAAGTATTCTCAACCATGACATTTGGAACGTGATGGAACAAGAGCTTGGTAGTAATTTAGCGAGCCACGCAGGTAGTTCCAGATGTCTCGGTGCCGATCGGATCAGACGGTTGTCAGTGCTTGAAGTAGGGCCCAGTTGGAGAGAAGATGATGGTAATTGGATTACAATCAGAAGGAGATCGGGCGACGATGAAATGAGAAGTGGGTCAACGCCAGCTTGGAATATTAATGAGTTGGAGGAGACGGAAAGCAGTAGTGGAAATAGTGAACTGGCCGACAAGTCATTGGAATTATTGAATCGAATTAGTAAGAAAAATGGTTTTGTAATTAGTGGCGGCATCTGTAAGAGAGGCAGGGATAAATCGTTAAATCGTGTAGTAACAAGTTTTTTAACGACTTAA 1242 45.97 MCWTRGQVIGRGSSAAVSVAINNLSGEVLAVKSAELSHSPFLQREQKILSSLNSPHIVSYKGCDISRENNKLIYNLFMEYFPGGTLSDQIRRKNLLLDESLIGIYTHQIVQGLKYLHAQGIVHCDIKGSNILIGQDGVKIADFGCSKILPVDPEVGIGSGTPMFMAPEVARGEEQGCPCDIWALGCTIIEMASGKLPWSDNSGDPVSVLYRIGCSGECPEIPRCLSEQAKDFVEKCLVRDQRERWTASQLLKHPFLEEINYNNNLNGRKIIQESYSTSSPTSILNHDIWNVMEQELGSNLASHAGSSRCLGADRIRRLSVLEVGPSWREDDGNWITIRRRSGDDEMRSGSTPAWNINELEETESSSGNSELADKSLELLNRISKKNGFVISGGICKRGRDKSLNRVVTSFLTT 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11113054 11114295 + Conep08aG0146600.1 Cone8ag1426 443975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1426 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1426 413 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Cone8ag1426 413 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Cone8ag1426 413 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cone8ag1426 413 CDD STKc_MAPKKK 3 256 - -
Cone8ag1426 413 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1426 413 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1426 413 SMART serkin_6 3 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1426 413 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 257 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0058 Cone-Chr4:298908 Cone8ag1426 Cone-Chr8:11113054 6.15E-63 dispersed
Cone7ag0054 Cone-Chr7:238135 Cone8ag1426 Cone-Chr8:11113054 6.07E-60 dispersed
Cone8ag0131 Cone-Chr8:677629 Cone8ag1426 Cone-Chr8:11113054 2.34E-63 dispersed
Cone8ag1426 Cone-Chr8:11113054 Cone9ag1329 Cone-Chr9:9976718 3.23E-60 dispersed
Cone12ag1369 Cone-Chr12:10167618 Cone8ag1426 Cone-Chr8:11113054 3.81E-258 wgd
Cone14ag1159 Cone-Chr14:9566867 Cone8ag1426 Cone-Chr8:11113054 3.11E-87 wgd
Cone15ag1175 Cone-Chr15:9476846 Cone8ag1426 Cone-Chr8:11113054 7.90E-90 wgd
Cone6ag1102 Cone-Chr6:6833662 Cone8ag1426 Cone-Chr8:11113054 1.83E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83140 PF00248 Aldo_ket_red 3.10E-60 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1426 K20716 - rcu:8285896 382.874