Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1442 ATGCCAGCCGGGATTATGAACGCCGCCAGAAACACGCCGCCGCTGATCGGAAGGAACGGAAATGTTAACAGCTTTGGATCCTCCTCGTCTCTCACCCTTAGTCAGCAGCCTAACAACATGATGGATGCCCACGTTCTCCACCCACTAAACATGGCCCAAAACACTTCCGATAGCGATCTTGCCGCCAGAATTCGGGATGATGATTTTGACACGGCCACTAAATCCGGCAGTGAAAACCAGGATCTAGCCTCAGGTGATGACCAAGAACCTCGTGCCAAAAAGAAGCGCTATCACCGCCACACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGAAAGGAACTGAGCAGGGAACTAGGGCTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGACCCAGCATGAGCGCCATGAAAACACACAGCTTAGAACAGAAAACGAAAAGCTTAGGTCTGACAACATGAGATACAGGGAAGCCCTGGGCAATGCTTCATGTCCCAATTGTGGAGGGCCAACCGCCATAGGAGAGATGTCTTTCGATGAACATCATCTCAGACTCGAAAACGCACGATTACGTGAAGAGATTGATCGGATTTCAGCTATAGCTGCGAAATACGTGGGAAAGCCGGTGCTGAGCTACCCTCTTATTTCTCCAGAAGGTTCTAATACTCGTCCTCTAGAACTTGGAGTGGGGAATTATGGGGGGCAATCTGGGAATATTGGAGGAGATGTTTTTGCGTCAGGAGATTTTCTTAGGTCGATTAATGCACCGACCGAGGCTGATAAGCCAATGATTATCGAGCTTGCTGTTGCAGCAATGGAGGAATTGATCAGAATGGCTCAAATGGCGGATCCCTTGTGGGTCAGATCAGGGATTGATGGGACCACATGTGTACTTAATGAAGATGAATACGCTAGAACATTTCCAAGAGGGATTGGACCAAAACCTTCTGGATTTATATGTGAAGCCTCGAGAGAAACAGCCGTTGTCATTATGAACCATATTAACCTTGTTGAGATACTCATGGATGTGAATCTATGGTCGACTGTGTTTTCTGGAATTGTCTCGAGAGCTTTGACACTAGAGGTGCTATCGACCGGAGTGGCCGGAAATTACAATGGGGCATTGCAAGTGATGACGTCAGAATTTCAAGTCCCCTCACCCCTTGTTCCAACCCGTGAGAGTTATTATGTAAGGTATTGTAAACAGCATGCTGATGGAACATGGGCTGTGGTCGATGTTTCTTTGGACAACCTACGACCTAGTCCCGCAGTCCGATGTAGAAGAAGACCCTCTGGCTGTTTGATTCAAGAAATGCCTAACGGTTATTCGAAGGTTACATGGGTTGAGCATGTGGAGGTAGATGATAGAGGGGTCCACAATCTGTATAGGCAGCTAGTTAGCTCCGGTCACGCATTTGGGGCGAAGCGTTGGGTTTCGACCTTAGACCGTCAATGTGAACGTCTTGCCAGTGCCATGGCCACAAACATCCCAACCGGTGATGTTGGCGTGATTACAAATCAAGAAGGAAGGAAGAGCATGTTGAAGCTGGCCGAGAGAATGGCAATAAGCTTTTGTGCTGGAGTGAGCGCCTCAACCACACACACATGGACAACACTATCTGGAACCGGTGCCGATGATGTTAGAGTTATGACTCGAAAAAGCATAGACGATCCCGGCCGTCCACCCGGCATCGTGCTTAGTGCTGCTACTTCCTTTTGGCTCCCTGTCCCTCCCAAAAGAGTTTTTGATTTCCTCCGTGACGAAAATTCTCGCAGCGAGTGGGACATTCTTTCAAATGGGGGAATTGTACAAGAAATGGCACACATTGCTAACGGCAGAGAAACAGGCAATTGTGTATCTTTGCTTCGAGTAAACAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTACAAGAGAGTTGCACAGACCCAACAGCCTCGTTTGTGATATATGCTCCCGTCGACATTGTCGCTATGAATGTGGTACTAAACGGAGGGGACCCGGATTACGTGGCACTTCTTCCCTCAGGATTTGCAATTCTACCGGATGGAACAACATCCAACGGCGGAGGAGGACCTGAGCTGGGGCCGAGTGGGTCCCTCTTGACAGTTGCCTTTCAGATTCTGGTTGATTCTGTCCCCACTGCAAAGCTATCCCTCGGATCAGTTGCTACCGTTAACAACCTAATTGCTTGCACCGTCGAGAGGATCAAGGCTTCTTTGTCCTGCGAGAATGCGTGA 2298 48.22 MPAGIMNAARNTPPLIGRNGNVNSFGSSSSLTLSQQPNNMMDAHVLHPLNMAQNTSDSDLAARIRDDDFDTATKSGSENQDLASGDDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRSDNMRYREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVLSYPLISPEGSNTRPLELGVGNYGGQSGNIGGDVFASGDFLRSINAPTEADKPMIIELAVAAMEELIRMAQMADPLWVRSGIDGTTCVLNEDEYARTFPRGIGPKPSGFICEASRETAVVIMNHINLVEILMDVNLWSTVFSGIVSRALTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYRQLVSSGHAFGAKRWVSTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMAISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGIVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSNGGGGPELGPSGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11179665 11184861 + Conep08aG0148400.1 Cone8ag1442 443991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1442 765 MobiDBLite consensus disorder prediction 1 21 - -
Cone8ag1442 765 FunFam Homeobox-leucine zipper protein GLABRA 2 285 505 - -
Cone8ag1442 765 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677(InterPro)
Cone8ag1442 765 MobiDBLite consensus disorder prediction 70 103 - -
Cone8ag1442 765 SUPERFAMILY Bet v1-like 525 757 - -
Cone8ag1442 765 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone8ag1442 765 Pfam Homeodomain 94 149 IPR001356 GO:0003677(InterPro)
Cone8ag1442 765 Gene3D - 80 168 - -
Cone8ag1442 765 Pfam START domain 286 506 IPR002913 GO:0008289(InterPro)
Cone8ag1442 765 Gene3D - 341 504 IPR023393 -
Cone8ag1442 765 ProSiteProfiles START domain profile. 276 509 IPR002913 GO:0008289(InterPro)
Cone8ag1442 765 SMART START_1 285 506 IPR002913 GO:0008289(InterPro)
Cone8ag1442 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 763 IPR042160 -
Cone8ag1442 765 Coils Coil 157 177 - -
Cone8ag1442 765 FunFam Homeobox-leucine zipper protein HDG1 78 167 - -
Cone8ag1442 765 SUPERFAMILY Homeodomain-like 83 151 IPR009057 -
Cone8ag1442 765 SMART HOX_1 92 155 IPR001356 GO:0003677(InterPro)
Cone8ag1442 765 CDD START_ArGLABRA2_like 280 505 - -
Cone8ag1442 765 CDD homeodomain 94 152 IPR001356 GO:0003677(InterPro)
Cone8ag1442 765 SUPERFAMILY Bet v1-like 276 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0104 Cone-Chr14:484646 Cone8ag1442 Cone-Chr8:11179665 6.56E-225 dispersed
Cone15ag0108 Cone-Chr15:520933 Cone8ag1442 Cone-Chr8:11179665 7.76E-221 dispersed
Cone15ag0360 Cone-Chr15:1665508 Cone8ag1442 Cone-Chr8:11179665 8.33E-201 dispersed
Cone18ag1103 Cone-Chr18:8049457 Cone8ag1442 Cone-Chr8:11179665 3.02E-266 dispersed
Cone18ag1247 Cone-Chr18:8823892 Cone8ag1442 Cone-Chr8:11179665 3.09E-151 dispersed
Cone20ag1249 Cone-Chr20:8207072 Cone8ag1442 Cone-Chr8:11179665 7.07E-180 dispersed
Cone3ag1343 Cone-Chr3:32393603 Cone8ag1442 Cone-Chr8:11179665 0 dispersed
Cone8ag0486 Cone-Chr8:3377935 Cone8ag1442 Cone-Chr8:11179665 1.79E-194 dispersed
Cone10ag1284 Cone-Chr10:9902693 Cone8ag1442 Cone-Chr8:11179665 0 wgd
Cone12ag1384 Cone-Chr12:10229796 Cone8ag1442 Cone-Chr8:11179665 0 wgd
Cone14ag1128 Cone-Chr14:9389140 Cone8ag1442 Cone-Chr8:11179665 1.14E-112 wgd
Cone15ag1147 Cone-Chr15:9316403 Cone8ag1442 Cone-Chr8:11179665 1.16E-17 wgd
Cone3ag1342 Cone-Chr3:32391730 Cone8ag1442 Cone-Chr8:11179665 4.95E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46740 PF00188 CAP 1.00E-17 CL0659 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1442 K09338 - rcu:8274823 1277.31