Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1470 ATGCCAGGAGCAGGCGAAAAGGAAGCTTCTGGTTTTCAAGATTTTCTCCCTCTAATGGCGGATAAACTGGGTGGTGAGGGGCTGATAGAGGAGCTGTGTAATGGGTTTTTTCTGCTCACGGACAGAGACAAGGGAGTGATCACTTTGGAAAGCTTAAGAAAGAATTCTCAGCTTCTGGGTCTGCAAGATTTGGAAGAGGAACAGCTTGTGAACATGATGCAGGAGGGGGATTTGGATGGTGATGGTGCTCTAAATCAGATGGAGTTTTGTGTATTAATGTTCAGATTGAGCCCCGAGTTGATGCAAGATTCCTTGTTTTGGCTTCAAGATTCATTGGACAAGGAATTCCAAAGATCCTGA 360 45.0 MPGAGEKEASGFQDFLPLMADKLGGEGLIEELCNGFFLLTDRDKGVITLESLRKNSQLLGLQDLEEEQLVNMMQEGDLDGDGALNQMEFCVLMFRLSPELMQDSLFWLQDSLDKEFQRS 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11261369 11262245 - Conep08aG0151200.1 Cone8ag1470 444019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1470 119 Pfam EF-hand domain pair 44 95 IPR002048 GO:0005509(InterPro)
Cone8ag1470 119 Gene3D - 10 119 - -
Cone8ag1470 119 SUPERFAMILY EF-hand 12 110 IPR011992 -
Cone8ag1470 119 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Cone8ag1470 119 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509(InterPro)
Cone8ag1470 119 PANTHER CALCIUM-BINDING PROTEIN KIC 7 118 IPR044205 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1470 K24345 - - mdm:103442566 169.088
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1414 Cone-Chr12:10329707 Cone8ag1470 Cone-Chr8:11261369 3.17E-82 dispersed
Cone8ag1470 Cone-Chr8:11261369 Cone9ag1038 Cone-Chr9:5571402 1.78E-40 dispersed
Cone10ag1304 Cone-Chr10:10178309 Cone8ag1470 Cone-Chr8:11261369 1.17E-57 wgd
Cone12ag1412 Cone-Chr12:10326260 Cone8ag1470 Cone-Chr8:11261369 3.17E-82 wgd
Cone14ag1105 Cone-Chr14:9216684 Cone8ag1470 Cone-Chr8:11261369 3.93E-47 wgd
Cone15ag1115 Cone-Chr15:9117356 Cone8ag1470 Cone-Chr8:11261369 8.85E-46 wgd
Cone3ag1371 Cone-Chr3:32698383 Cone8ag1470 Cone-Chr8:11261369 1.17E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g382 . . . . Bpe09g00209 . Bma10g00522 Bma13g01002 Cmo16g00921 . . . . . . . . . . . . . . . . . . . . . . Cone3ag1371 Cone10ag1304 Cone8ag1470 Cone12ag1414 . . . Cme06g02311 Blo07g00932 Blo10g00788 Bda05g00750 Bda12g00873 . Bpe03g00815 . . . . . . Cma16g00813 . Car16g00864 Cpe14g00718 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000541 9 3 5 9 4 3 3 3 3 2 3 3 3 2 3 4 3 8 2 3 3 3 2 3 2 4 3 2 3 3 106