Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1481 ATGGGTGCTTGTGTCTCTACCAGTCATAAGAATGGGAGCAATGGAGAGAAAGATCCCTCATTCTCAGCTTTAAAACTTTATGCTAGAAAGAAAACAAAGAAAACCTTCTCCAATCACATTATTTCTCTTAAAAATTTACCATCCATACCCAACCGGATTTTTATGAACGGAAAGAGTCGAACCTCGTGCATATTCACACAGCAGGGTCGGAAGGGCATAAACCAGGATGCAATGATTGTATGGGAAGATTTCATGTCAGATGCGACGTTTTGCGGTGTATTTGATGGTCATGGACCCCACGGGCACCTTGTTGCGAGAAAAGTGAGGGATGCATTGCCGGTTAAGCTTCTCTCTTCATTGCATTCTTCTCAGTCAAAGCAAAACGGGTCCGGTAATACCTGTTTCAAAAAGAATCTGAAGAATTCTGATCCTGGAGATGGAGATTCCGAGAAGGATGGCTTGGTTGAGGATAAAGTAAATTCTTTGTGGCGTGATGCTTTCCTGAAATCGTACAAGGCTATGGATAAAGAGCTCAGATCACACCGTAATTTGGGCTGTTTTTGTAGTGGTAGTACTGCTGTAACTATAATCAAACAGGGTTCAAATCTTTTTACGGGATATATAGGGGATTCTCGAGCAATCCTCGGATCTAAGGACATCAATGATTCTATGGTCGCAACCCAATTGACTGTTGATTTAAAACCTGATTTACCAAGAGAAGCTGAAAGGATAAAACGGTGTAAAGGTAGAGTCTTTGCTCTACAAGATGAGCCGGAAGTGCCTAGAGTATGGTTGCCCTTTGATGATGCACCTGGATTAGCCATGGCTCGGGCATTTGGTGATTTCTGCTTGAAGGATTATGGTGTGATCTCTATACCTGAGTTCTCACACCGGATTCTTACAGACAAAGATCAATTCATAGTTCTTGCCTCAGATGGGATTTGGGATGTCTTAAGCAATGAAGAGGTGGTTGAGATAGTCTCATTAGCTCCAATCCGATCCTCAGCGGCTAGGACCGTGGTTGAGTCAGCGGCTCGTGAGTGGAGCCTCAAGTACCCAACTTCTAAAATGGATGATTGTGCAGTGGTTTGCTTGTTTTTGGACGGGAAAATGGACTCTGAATCTGATTATGAAGAACAATGTTACTACTCTGCAATTCTACAACGCGATCATTCTCCTAATGCTGTAGAAGAAGATGATGGACAGCAGAAGTCCAAGCTGTCTTTGCAGAGGAATAACACTGTTAGATCATCCGAAGAAAATAAGAGTACTTTTGCCAGAGTAGAGGTTGAACTTGAAGGTTGTGATGAAGAAACTGTATTAGGTGAAGATCAAAGCTATTCGGGTTTGGAAGGCGTTACGAGAGTGAATTCGCTCGTTCAACTTCCCAGATTTTCCGAGGAAAGGGTCAATAATTTCCCTCAAGTTTCATGA 1434 42.68 MGACVSTSHKNGSNGEKDPSFSALKLYARKKTKKTFSNHIISLKNLPSIPNRIFMNGKSRTSCIFTQQGRKGINQDAMIVWEDFMSDATFCGVFDGHGPHGHLVARKVRDALPVKLLSSLHSSQSKQNGSGNTCFKKNLKNSDPGDGDSEKDGLVEDKVNSLWRDAFLKSYKAMDKELRSHRNLGCFCSGSTAVTIIKQGSNLFTGYIGDSRAILGSKDINDSMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKDYGVISIPEFSHRILTDKDQFIVLASDGIWDVLSNEEVVEIVSLAPIRSSAARTVVESAAREWSLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQCYYSAILQRDHSPNAVEEDDGQQKSKLSLQRNNTVRSSEENKSTFARVEVELEGCDEETVLGEDQSYSGLEGVTRVNSLVQLPRFSEERVNNFPQVS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11312853 11315889 + Conep08aG0152300.1 Cone8ag1481 444030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1481 477 ProSiteProfiles PPM-type phosphatase domain profile. 61 367 IPR001932 -
Cone8ag1481 477 MobiDBLite consensus disorder prediction 122 153 - -
Cone8ag1481 477 MobiDBLite consensus disorder prediction 394 422 - -
Cone8ag1481 477 Gene3D - 53 369 IPR036457 -
Cone8ag1481 477 MobiDBLite consensus disorder prediction 406 421 - -
Cone8ag1481 477 MobiDBLite consensus disorder prediction 122 139 - -
Cone8ag1481 477 CDD PP2Cc 67 367 IPR001932 -
Cone8ag1481 477 SMART PP2C_4 45 365 IPR001932 -
Cone8ag1481 477 Pfam Protein phosphatase 2C 162 328 IPR001932 -
Cone8ag1481 477 PANTHER PROTEIN PHOSPHATASE 62 366 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone8ag1481 477 SUPERFAMILY PP2C-like 52 369 IPR036457 -
Cone8ag1481 477 FunFam probable protein phosphatase 2C 52 52 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1401 Cone-Chr3:32875962 Cone8ag1481 Cone-Chr8:11312853 2.92E-239 dispersed
Cone5ag0943 Cone-Chr5:4036801 Cone8ag1481 Cone-Chr8:11312853 7.09E-136 dispersed
Cone7ag0702 Cone-Chr7:4021963 Cone8ag1481 Cone-Chr8:11312853 1.06E-26 dispersed
Cone8ag1481 Cone-Chr8:11312853 Cone20ag0280 Cone-Chr20:1254286 1.25E-17 dispersed
Cone10ag1329 Cone-Chr10:10363256 Cone8ag1481 Cone-Chr8:11312853 3.72E-235 wgd
Cone12ag1441 Cone-Chr12:10420790 Cone8ag1481 Cone-Chr8:11312853 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1481 - - - 0.0