Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1493 ATGACATTTTCCTCGTTTCTGAGCAGAGCTTCCGGAGCTTTCCATGGCTACTCTGGCTACTCTAAGCTTCTCGTTGTCTGCACAGTCAGTAGTGGTGGTCTAGTTGCATACTCAGAATCACAAACAAACATTGTCACTCCTACGGAAGAGGAGCCGAAGAAAAAGAAGGTTTTGGTGCTTGGAACTGGCTGGGCTGGTACTAGTTTCCTAAAGGATCTGGATGCTTCAATATTTGATGTTCAAGTCATTTCTCCCCGTAACTACTTTGCATTCACCCCATTATTACCTAGTGTTACATGTGGGACAGTTGAAGCTAGGAGCATCGTAGAACCAGTTCGAAACATCATAAAGAAGAGAAAAGGTGAAATTCGATACTGGGAAGCAGAATGCGTCAAGATAGATGCTGCTAACAAAAAGGTTTTCTGTCGCACGGACAAAGACAACAATGTGGTTGGGAGTAAAGATTTCTCTTTAGACTATGACTACTTGGTAATTGCATTAGGGGCACAAGTTAATACTTTCAACACTCCTGGCGTGAAGGAAAACTGCCATTTTCTCAAGGAAGTAGAGGATGCTCAAAAGCTCCGTAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGCTTCCTAGTCTAAATGAGGATGAACAGAGAAGAAATCTTCATTTTGTAATAGTTGGAGGGGGTCCCACTGGTGTGGAGTTTGCTGCAGAGCTGCATGATTACGTCAATGAGGATCTAGTCAGCTTGTATCCCTCTGTTGCAGATCTGGTCACAATAATCCTGATTCAATCAGGAGATCACATCTTGAACACGTTTGATGAAAGAATTAGTTCATTTGCGGAACAGAAATTTGGTCGAGATGGTATTGAAGTGAAAACAGGATGTCGGGTTCTGAATGTTTCAGATAAGGAAATTGAAATGAAAGTGAAATCAACGGGAGAAGTATGCCATATACCCCATGGGTTAGTTGTGTGGTCTACTGGCATTGAGACTCGTCCTGTTGTGAAGGACTTCATAGAGCAAATTGGACAGGCTAATAGACGTATTCTAGCAACTGATGAATGGCTGCGAGTAAAGGGTTGTTTAGACGTATATGCTATTGGTGATTGTGCTACCATTGATCAACGCAAAATTATGGAAGATATTTCCAAAATATTTGAGGCTGCCGATAAAGACAACTCCGGTACCCTAACGGTCGAGGAATTCCGAGATGTAGTTGATGACATCCTCATAAGGTACCCCCAAGTGGATCTCTATCTCAAGAGCAAGCATCTGTTAGACTTAACAGATCTGTTGCGAGATTCTGATGGGAATGAGAGGAATGAAGTGGATATAGAGGGTTTCAAGTTGGCTCTTTCTCATGTGGACTCGCAGATAAAGAGTCTACCAGCTACTGCCCAGGTTGCTGCTCAACAGGGTGCATATCTTTCTAGATGCTTCAACCGAAGGGAGCAGTGCAGGGGTAGTCCAGAAGGTCCTAGACACTTCATAGGTTCTGGGCGTCATCGGTTTCTTCCCTTTCGGTATAAGCATTTAGGGCAGTTTGCTCCTCTTGGAGGAGAACAGGCAGCTGCAGAACTTCCTGGAGATTGGGTTTCGATGGGACATAGTACCCAGTGGCTTTGGTATTCTGTTTATGCGAGCAAACAAGTGAGCTGGCGCACTAGGTGTCTGGTTGTGTTTGATTGGACAAGGAGGTACATTTTCGGAAGAGACTCGAGCCGCATTTGA 1731 44.02 MTFSSFLSRASGAFHGYSGYSKLLVVCTVSSGGLVAYSESQTNIVTPTEEEPKKKKVLVLGTGWAGTSFLKDLDASIFDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIRYWEAECVKIDAANKKVFCRTDKDNNVVGSKDFSLDYDYLVIALGAQVNTFNTPGVKENCHFLKEVEDAQKLRRSVIDCFEMAVLPSLNEDEQRRNLHFVIVGGGPTGVEFAAELHDYVNEDLVSLYPSVADLVTIILIQSGDHILNTFDERISSFAEQKFGRDGIEVKTGCRVLNVSDKEIEMKVKSTGEVCHIPHGLVVWSTGIETRPVVKDFIEQIGQANRRILATDEWLRVKGCLDVYAIGDCATIDQRKIMEDISKIFEAADKDNSGTLTVEEFRDVVDDILIRYPQVDLYLKSKHLLDLTDLLRDSDGNERNEVDIEGFKLALSHVDSQIKSLPATAQVAAQQGAYLSRCFNRREQCRGSPEGPRHFIGSGRHRFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRCLVVFDWTRRYIFGRDSSRI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11353829 11357623 + Conep08aG0154000.1 Cone8ag1493 444042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1493 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 406 - -
Cone8ag1493 576 Pfam EF hand 382 406 IPR002048 GO:0005509(InterPro)
Cone8ag1493 576 Pfam NDH2 C-terminal domain 511 572 IPR054585 -
Cone8ag1493 576 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509(InterPro)
Cone8ag1493 576 PANTHER NADH DEHYDROGENASE 41 576 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cone8ag1493 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Cone8ag1493 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Cone8ag1493 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Cone8ag1493 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 423 575 - -
Cone8ag1493 576 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Cone8ag1493 576 Gene3D - 427 575 - -
Cone8ag1493 576 Gene3D - 45 396 - -
Cone8ag1493 576 SUPERFAMILY FAD/NAD(P)-binding domain 220 374 IPR036188 -
Cone8ag1493 576 SUPERFAMILY EF-hand 374 461 IPR011992 -
Cone8ag1493 576 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Cone8ag1493 576 SMART efh_1 381 409 IPR002048 GO:0005509(InterPro)
Cone8ag1493 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 378 IPR023753 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0564 Cone-Chr1:5754168 Cone8ag1493 Cone-Chr8:11353829 3.74E-69 dispersed
Cone5ag0413 Cone-Chr5:1758449 Cone8ag1493 Cone-Chr8:11353829 4.24E-08 dispersed
Cone6ag1051 Cone-Chr6:6132461 Cone8ag1493 Cone-Chr8:11353829 1.07E-284 dispersed
Cone8ag1493 Cone-Chr8:11353829 Cone9ag1046 Cone-Chr9:5669504 7.01E-283 dispersed
Cone12ag1429 Cone-Chr12:10380651 Cone8ag1493 Cone-Chr8:11353829 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1493 K03885 - csv:101203130 934.865