Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1502 ATGGATAGGATGGTGAGGAGCTGTACACAATCAATGTTGAAGTTGGTGAATTCAGGGATTGGTATGGTTGGGATTGCCCAAATTTTGTACGGTGTTTGGTTGATTAAGGTTTGGCAGAAGCAAATGGGTCAGTTCCCCTTTGGACACTCACATTTCCCTGTTCCATGGTTTATCTACACTTCTCTTGGCCTTGGAATTGCTCTTTGTGTGATCACATGCTCGGGTCATATCGCAGCAGAATACGCGAGTGGTTGCTGCCTTTATTTGTATATGTTGTTTGTGTATACGCTTTTCATGCTGGAGGCCGCACTGGTTGCCGACGTGTTTCTGAATCATCACTGGGAAAAGGATTTTCCTGAGGATCCAACGGGGAGTTTTGATCAGTTCAGAGATTTCATCAGATCAAACTTCAGTATCTGCAAATCAATAGGCCTCGCTGTTTTGTGTATACAGGGGATGTCTCTGCTACTGGCCATGATTCTAAAAGTGCTAGGACCAGCTCAACACTATGAATGTGAGGATGACGATGACATAGAGCATTCATCCGCAGTGAGAGCTCCTCTACTAAACAATGCAGTTCTCTCACCCCGTTACGTTGTCGTCAACCCTGTCTATGCATCCAATAAGAAGATAGAAGATGTTTGTCTGGTGATAAATGGTGGGCCAGCCGCGGTAAGTGGTGGCGCCAACTACACCCAGCCTACACTCTCCTCTCAGACAATGCAGCTCCGCCGTTGCTCTCTCCGACATTGGCTCATCATGGCGGCAATGGCGGCGACCTCGCTCGTAAATGCGACCTTAACTCCTCTCCAACACGCCGTTATCGACCAGAACTGGCACCCAGCCACCGCCACCTGGTACGGAAGTCCCGAAGGCGACGGCAGCGACGGTGGAGCCTGTGGGTATGGAGACATGGTGGACGTGCGGCCATTGAAGGCTAGGGTAGGTGCGGTGAGTCCGGTGCTGTTCAAGAACGGCGAAGGGTGCGGTGCGTGCTACAAAGTCAAATGCTTGGACCAGTCCATATGCTCGAGACGGGCCGTGACTGTGATTGTCACCGACGAGTGTCCGGGAGGGTACTGCTCTAACGGGCGGACCCACTTTGACCTCAGCGGGGCGGCGTTCGGGCGCATGGCTATTTCCGGCGAAAACGGTCCACTCAGAAACCGAGGAGAGATCCCGGTCATTTACCGAAGGACTCCATGTAAGTATCCTGGGAAGAACATTGCGTTTCATGTAAATGAAGGCTCGACTGATTACTGGCTGTCCCTCTTGGTTGAGTTCGAGGATGGAGATGGAGATGTCGGCTCAATGCATATAAGAGATGCAAGGTCTAGTGACTGGGTTGAGATGAATCATGTGTGGGGAGCAAATTGGTGCATAATTGGTGGGCCACTAAAGGGTCCATTTTCAGTGAAGTTAACGACATTATCAACGGCCAGAACTCTGTCGGCAAGAGATGTGATTCCAAGGAATTGGTCTCCTAAGGCCACTTACACTTCCCGCCTGAATTTCTTCTCCTGA 1524 50.59 MDRMVRSCTQSMLKLVNSGIGMVGIAQILYGVWLIKVWQKQMGQFPFGHSHFPVPWFIYTSLGLGIALCVITCSGHIAAEYASGCCLYLYMLFVYTLFMLEAALVADVFLNHHWEKDFPEDPTGSFDQFRDFIRSNFSICKSIGLAVLCIQGMSLLLAMILKVLGPAQHYECEDDDDIEHSSAVRAPLLNNAVLSPRYVVVNPVYASNKKIEDVCLVINGGPAAVSGGANYTQPTLSSQTMQLRRCSLRHWLIMAAMAATSLVNATLTPLQHAVIDQNWHPATATWYGSPEGDGSDGGACGYGDMVDVRPLKARVGAVSPVLFKNGEGCGACYKVKCLDQSICSRRAVTVIVTDECPGGYCSNGRTHFDLSGAAFGRMAISGENGPLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIRDARSSDWVEMNHVWGANWCIIGGPLKGPFSVKLTTLSTARTLSARDVIPRNWSPKATYTSRLNFFS 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11379574 11384102 - Conep08aG0154900.1 Cone8ag1502 444051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1502 507 Pfam Expansin C-terminal domain 409 490 IPR007117 -
Cone8ag1502 507 FunFam Beta-expansin 3 404 506 - -
Cone8ag1502 507 Pfam Lytic transglycolase 317 396 IPR009009 -
Cone8ag1502 507 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 420 501 IPR007117 -
Cone8ag1502 507 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 297 407 IPR007112 -
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 278 293 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 487 501 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 319 337 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 390 406 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 448 462 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 PRINTS Expansin/Lol pI family signature 296 314 IPR007118 GO:0005576(InterPro)
Cone8ag1502 507 Gene3D - 403 502 IPR036749 -
Cone8ag1502 507 SUPERFAMILY Barwin-like endoglucanases 268 406 IPR036908 -
Cone8ag1502 507 FunFam Expansin B3 265 403 - -
Cone8ag1502 507 Gene3D - 265 402 IPR036908 -
Cone8ag1502 507 SUPERFAMILY PHL pollen allergen 407 501 IPR036749 -
Cone8ag1502 507 CDD DPBB_EXPB_N 279 402 - -
Cone8ag1502 507 PANTHER EXPANSIN-B3 261 505 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 317 328 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 427 442 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 411 426 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 357 372 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 379 394 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 PRINTS Major pollen allergen Lol pI signature 477 494 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cone8ag1502 507 SMART dpbb_1 315 397 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0518 Cone-Chr14:2595107 Cone8ag1502 Cone-Chr8:11379574 4.04E-75 dispersed
Cone15ag0545 Cone-Chr15:2711301 Cone8ag1502 Cone-Chr8:11379574 9.34E-73 dispersed
Cone12ag1453 Cone-Chr12:10462776 Cone8ag1502 Cone-Chr8:11379574 7.30E-117 transposed
Cone12ag1452 Cone-Chr12:10458242 Cone8ag1502 Cone-Chr8:11379574 8.12E-183 wgd
Cone15ag1061 Cone-Chr15:8779097 Cone8ag1502 Cone-Chr8:11379574 6.75E-35 wgd
Cone3ag1410 Cone-Chr3:32948120 Cone8ag1502 Cone-Chr8:11379574 1.87E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1502 K20628 - csv:101202998 445.662